K18514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18514

Determination of introduced cDNA(s)

  • J023131A03 - Rice Full-length cDNAs - Original: J023131A03

    full reading [+] show sequence

    Nucleotide sequence: J023131A03 - full reading 
    GGAGTTCGCC GAGCCGAGCC CGAGCACTCG CCGCCGCTTC AACCGCCGCT 
    CCCCGCAACG ACGCCCCCCC CACCAGCGAA GCCATAGACA AGTTGGTCTC 
    ATGAATTCAG GAAGCACATT GGCATCCAGA GTTTCCTGTT CATCGGGAAA 
    CAACGGCATC TTCCCACCCT GCCTTCTCCC AGGATTCCTG GGATTCCCAG 
    TTGTGTTTGT AAACTTCCAC TTGTTCAAGG CCATTGTTCG CAGCCCTGCA 
    TCTTCTGTTG TGTTGGGAAT CTGTGGAGGG CGCCTTCCAT AGAGAGGTGC 
    CCCATAAGTC TTTTGTTTAG TTAGTCTGGG AACTGGCATA GCTGGAATTT 
    GTGGTGCAAA ACATCCTTGG CATCAGTAGT CTACACTGCT GAATCTCAAG 
    TTCCTGAAGA TGGTTTCCTC TGAAATAAGC TCTGTTACAA CAACCCATGC 
    ACAAGGTCCC AAGCTCTTTA GAGGGAAGAT ACTTCTGCCA ATGGGCCCTC 
    CAGATGTTGT GCCTTCTGAG AACGTTGAGT TCGATTTTTC TGATGTTTTT 
    GGTCCTACGG CAGTCCAGAC TCCCACAGAT CTGAGCATCC TCACTCCAGA 
    CAGTCCTGCA CCTTTGACTG AGTCCAGTGA GGGGATTTAC AATGACCCTT 
    TGGTTATTGT CAAGAGATCT CATTCTCTTG TTGGTCCAAG TTCACTTGTT 
    AGCCAATCTT TGCCACTTAG TAAGCTTACA CTGCATGAAT CTGATAGCGC 
    ATTGGACCTT CTGGAGTGTA CTAAAGAAAA GAAAAGCAAC CAAGAAGCTC 
    TGAGTGATGA AGAGCTTGAT GATACAAAAA ATGAGAATGG TGTTGTTGGA 
    CTTGACGACT TTGAAGTCTT GAAGCTTGTT GGCCAAGGGG CATTTGGCAA 
    GGTCTTTCAA GTGAGAAAGA AAGGTACTTC AGAAATATAC GCAATGAAAG 
    TTATGAGGAA GGACAAGATT TTGGAGAAGA ACCATGCTGA GTACATGAAA 
    GCAGAGAGAG ATATACTGAC TAAAGTTGAT CATCCTTTTG TTGTACAGCT 
    GAGGTACTCC TTTCAGACAA AATACCGACT TTACCTTGTG TTGGACTTCA 
    TAAATGGGGG CCATCTTTTC TTCCAGCTCT ACCAACAGGG TTTGTTTAGG 
    GAGGAGCTTG CACGCATCTA CACTGCTGAA ATCGTGTCTG CTGTAGCCCA 
    TCTCCATGCC AATGGAATTA TGCACAGAGA TCTGAAGCCT GAGAACATCT 
    TGTTGGATGC TGATGGACAT GCCATGCTGA CTGATTTTGG CCTGGCAAAG 
    GAATTTGATG AAAACACTAG ATCAAACTCA ATGTGTGGTA CTGTTGAGTA 
    CATGGCTCCA GAAATTGTTC AGGGCCGTGG TCATGATAAG GCTGCTGACT 
    GGTGGAGTGT GGGAATCCTT TTGTTTGAAA TGCTTACAGG AAAGCCTCCG 
    TTTGTTGGCG GAAACAGGGA CAAAGTTCAG CAGAAGATTG TTAAGGAGAA 
    AATTAAGCTT CCGGCATATT TATCTAGCGA AGTTCATTCT CTGCTAAAAG 
    GCTTACTGCA CAAAGAAGCT GGCAGGAGGC TGGGCTGTGG ACCAGGCGGG 
    AGCAATGAAA TAAAGAATCA CAAGTGGTTC AAGTCAGTAA ACTGGAAGAA 
    GCTAGACTCC CGACAGATTC AGCCAAGCTT CCGCCCAAAT GTTGCTGGCA 
    AAACCTGCAT CGCCAACTTT GACGAGTGCT GGACCAGCAT GCCCGTGCTC 
    GACTCTCCAG TGGCCAGCCC TGTCGCTGCA GATAGCAACT TCGTGGGATT 
    CAGCTATGTG AGGCCAGCGC CCTTCCTTCA GAGGCCGAGT CCTCTAGGCT 
    GAAGACCTCC AGTTGAGACC GAAATACATC TTGCCACTGG GTATGAAGCT 
    GACAAAATTT ACTGTTTCGA TGATTATTAT GTAAAACTAC CTATTTATGT 
    TGTTCGGTTT GTCTGGGAAA ACCCCAGTAT CTTTTCTTCG TTGAAGATAC 
    TAGTAAAAGA TGAACGTGGT ACTTGTTGAA ACCAGACAAA TTTGTCTATT 
    GCCAGATGGA ACAGTTGCCC TGGCTTCTAT GATCAACCCC TGCCCCCTGG 
    GCCCTGGGCC CCTGGCACAT TTAGGTTTTC TCGGCCGTTC ACGTACATGT 
    TTCCAAATCC AAATCCTGCT GCATGTTGCA ACACAAATCC TGTTGAGATG 
    CAAATTTAAA GCATACCGTT TATGCATGTT GAAATGTAAA TTCG

    Gene models with high sequence identity

    1. AT3G08720.2 [+] show detail - serine/threonine protein kinase 2
      E-value: 1e-162; Score: 570.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 3e-71
    HMMPfam Protein kinase, C-terminal 1e-07
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 5.8e-104
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.9e-11
    HMMSmart AGC-kinase, C-terminal 1.6e-16
    Gene3D no description 8.1e-73
    ProfileScan Protein kinase, catalytic domain 51.128
    ProfileScan AGC-kinase, C-terminal 13.452
    HMMPanther RIBOSOMAL PROTEIN S6 KINASE BETA 4.6e-190
    HMMPanther SERINE/THREONINE PROTEIN KINASE 4.6e-190
    superfamily Protein kinase-like domain 1.4e-93

    See the detailed result >

    AT3G08720.2

    Model type
    Protein coding
    Short Description
    serine/threonine protein kinase 2
    Curator Summary
    Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.
    Computational Description
    Arabidopsis thaliana protein kinase 19 (ATPK19); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, C-terminal (InterPro:IPR017892), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: protein-serine kinase 1 (TAIR:AT3G08730.1); Has 133901 Blast hits to 131707 proteins in 4554 species: Archae - 204; Bacteria - 15943; Metazoa - 48718; Fungi - 13429; Plants - 32816; Viruses - 561; Other Eukaryotes - 22230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR