K18526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18526

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K18526

Determination of introduced cDNA(s)

  • J033113N10 - Rice Full-length cDNAs - Original: J033113N10

    full reading [+] show sequence

    Nucleotide sequence: J033113N10 - full reading 
    GACCGCCCTC ACTTCCACCG CCGCCGCCGC CGCCGCCGTG TACCCCCTCC 
    CCCGCCGCTT GACGCGCCTC CTCTTCGTCG ACCCAATCCC TCCGTCGGCT 
    AGGGCTCTGA CACTGACCGT GGTCCGTGAG CACTTGGCCA CTAGTCCCTG 
    CTCTGCCACT GGGTTCAGCA TATGGATTTG CCAGGTCCAA GATGGAAGAA 
    GGGCAAAGAT GGCAAGGACT TTGCGTCCCT AGCAGCAGCT AACCCCATGT 
    CAGCCATTGT TTCTGAGCTC AAGGCCTCAT TCATAAGCTC AAAGCCCGTG 
    GCAATTTTGT CTGGTCCGGG TGGTAGCGCC GTTCTTGGAG TTGGGCCAGA 
    GCAAGCCGTG ATCCTAAACC GTGCTGCCTT TGGCCATGCC ATCGAAAATG 
    CAACAGCACA GAAGCATTGG TTCCAACTCA GCCCCGAGGA GGTCTTTTAC 
    CTATGCCATG CTCTGAATTG CATCAGGGTT GACTCACTGG ACAATAAGCA 
    AATGAGTGAA ATTGAACTGT GGGATTACTT TAGGTCTGGA TCGGAGTCAT 
    TTCCGGAGAT GTACAAGGCT TACGCACATC TGAGATTGAA GAACTGGGTG 
    GTGAGATCAG GGCTGCAGTA TGGTGCGGAT TTTGTAGCTT ACCGTCACCA 
    TCCAGCGCTC GTCCACTCGG AATTTGCAGT GGTTGTAGTT CCAGAAGGTG 
    CAGAGTTTGG CAATAGGTGT GGCCGTCTGG AGGTGTGGTC TGATCTACTA 
    TGTGCACTCC GGGCTTCTGG CAGTGTAGCA AAGACATTAC TGGTTCTGAC 
    AATTAGCAGC AGCAGTAAAT GTGAACTGAG CTCCCCAGAT TGTTTGGAAC 
    AGCTTGTTGT TCACGAGAGA ACGATCACAA GATGGATACT GCAGCAATGC 
    CGTGAACAAC GATGTGAACC AAGCAGAGAT GAAGTGAATA GGGAAGAACT 
    GATTATTGAA AAGGAAAGTG TAGTATTTAA TCACTGGGGT GTGATACTAG 
    GCTTCACTGT TCTATCTGGC TTGCTTGTGT ACAGGTTGAA ATTCAGACAA 
    TAGAGTTAAC ATTTCTGTGC ACCTGTGTTG TTGAGGTGTT AGCTTGGAAT 
    TTGAAATCCT GAGTTGTACT CTTTTGTGAG CCTTGCTTCT GGTTTCTAGT 
    CTAGATATGA CAAATAATTA TAGCCACGCA TCTGACTTGG ACAGCAGAGA 
    AACGTTTGAA TTTTGATCTG TCTTAGATCT TGAAT

    Gene models with high sequence identity

    1. AT5G60230.2 [+] show detail - splicing endonuclease 2
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA intron endonuclease, catalytic domain-like 7.7e-24
    HMMPfam tRNA intron endonuclease, N-terminal 4.7e-08
    superfamily tRNA intron endonuclease, catalytic domain-like 1.5e-23
    Gene3D Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal 7e-19
    HMMPanther TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 2.8e-43

    See the detailed result >

    AT5G60230.2

    Model type
    Protein coding
    Short Description
    splicing endonuclease 2
    Curator Summary
    putative subunit of tRNA splicing endonuclease
    Computational Description
    splicing endonuclease 2 (SEN2); CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA-intron endonuclease (InterPro:IPR006676), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856), tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR