K18748

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18748

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18748

Determination of introduced cDNA(s)

  • J013120N16 - Rice Full-length cDNAs - Original: J013120N16

    full reading [+] show sequence

    Nucleotide sequence: J013120N16 - full reading 
    GATCCGCACC AACCTCTCCC TCCTCCCTCC CCTCTCCTCG CCTCCGCCTC 
    CGCCTCCGCC TCCCAAGAAG GCGAACCCTA TTCCGCCCCC GATTCTCCCG 
    GAGCGGGGGG CCGGACTCCC GTTGCGCGAT TGGGCGGTGA AACCCGAATC 
    CCCCTGCGGG CGGCGGCGTC CGTTTCTCAT CTACCGTCGG CGTTGGGGGG 
    GACGCCGCCC CATGGGCCGG TCGCCAGCGA TATATCACTA TCAGCTCATC 
    GACCGGCGGA AAGGGCTTGG ATAAAATCTT ATTGCAAATT TCCCCTTGTA 
    CATGTAACAT CACATGTAAT TTCTATTAAA AATGACTTCA CTCAATAAAG 
    TTGTTTCCAA TGGAGATACA AGGTCAATGT TGCCAAATAA AGTCACAGCA 
    TTGAATCCCA ACGCAGCAGA ATTTGTACCT TCATGTATTA GACCATCTTT 
    TGAGAGTAGC GCTGTCTCAG ATGTAAGTAA GGCAGATCTT AGGGCTTCTG 
    GGAAAACTAT CCTAGATAGG TCCGAGTCAT CAAAGTCAAA TAACTCGGAT 
    GATGAGGCAC ACCAGTTTTG GCGTAAGCAG CTTCCTGATG ACATTATTCC 
    AGACTTCAGT TTTGAGAAAA TTGAACAAGA ACCTGAAGAA TTGTCTCTTG 
    CTGGATTATC CTTGAATGCA CCCCCTTTCT ATGGAACAAC AGCTAGCCGC 
    TTTTCAAGAG AGCATGATTT ATCTTCTCAA GCTAACAAGA GCCTGGAACT 
    GGGGCTTACC AGTTTACTTT ATGAAGATAA TTCACAAGCA TCGTTTCCAA 
    CTATGGGTTC AAGCAATTGG GAGCAAAATT TTGTAGGGGA TCTCCATTTT 
    ACGAATGGAA ATCAGGGCCT TCATTATGAT TCTGAAAGTG CTGCAGGCTT 
    TTCTGACAGT TTTGCTAGCG ATTATGCTGC AGCAACAGAC GATGTTCTTG 
    ACCCCCTAGC GTATTTAGCT TCACAGTTTC CTGATTTTTC ATCAGAGAGC 
    CTTGCAGAGC TGTACTATGC TAATGGATGT GACTTCAACC ATACTATTGA 
    AATCCTCACC CAGCTAGAGA TGCAAGTTGA TGCTACCTCC AATCCAACTC 
    TGACCCCCAG GACACCAAAC TTTAGCACAG GGGACTTCCC CGCACTGCCA 
    ACAGTTGAAG ACCAAAATGG TTTTTCCAAA GGCAATGCAG ATATTCTAAG 
    CATCTTCAAT GGACGCAGCT CACCCTCTGT ATCTACTGGT ACTGGTGATT 
    TTGTTTCAGC TGTTCGCAAA CTTGCATCGC AAAATTCTGG CCATTGGAAG 
    TATAAGAAAG GTCCTGAATA CGGTAATGGT GTTTCAACTG TTTCTGTACC 
    CAAGCAGTAC AGTTCTACGA CCAAAACATC TTCTGGAAAC AAGTTTCAAA 
    GTGTTAGCAG TGCAAGAGCT GCTCCATGGC TCGAAACTGG AGATGCAGTA 
    GCAAACATGT ACTCAGAATC AAGGGGAGAA GCCCGTGATT TTGCCCGCAT 
    CCGAAATGCA TGTTTTGAGC AGGCTAGACA GGCTTACCTG ATTGGCAACA 
    AAGCTCTAGC CAAGGAATTG AGTATGAAGG GACAGACATA TAACACACAA 
    ATGAAAGCAT CTCATGAGAA AGCAAGAGAA GCTATTTATC GACAGAGGAA 
    CCCATCTTCG CAACGAGGGA GCGACCGTCT GATCGATCTA CATGGTCTCC 
    ATGTGAACGA AGCAATCCAT ATACTTAAGG TCGAGCTCGG TACTCTTAAG 
    AGCACCGCGA GGGCTACAGG TGAGAGGATG CAAGTCATGA TATGTGTCGG 
    GACAGGTCAT CACACCAAGG GTTCTCGCAC CGCCAGGCTG CCCATCGCCG 
    TCGAGCAGTT TCTTCTGGAG GAAGGCCTCC ACTACACGCA GGCACAACCT 
    GGTTTGCTCC GTGTTGTGGT GTTCTAACAT CTCTTAGGTC AGCAGCACGA 
    AGAAAAAAGA AGCAAAACAA AAAAAGGAGA AAGAGATGTA GGGAAAAGAA 
    AAACCTAAAA AAAATGGCCG CTGTTGCAGC ACTGTAATTT TCTTGTAGTT 
    GTATATTAAA AGAGGCAGCA GGAGAATAGC CTGACAACAG AATACAGTGT 
    AAAATTATAC ATAGCTTCAT TCAATTCACA TTCCATTCCC

    Gene models with high sequence identity

    1. AT2G26280.1 [+] show detail - CTC-interacting domain 7
      E-value: 3e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Domain of unknown function DUF1771 1.1e-13
    HMMPfam Smr protein/MutS2 C-terminal 3.8e-08
    HMMPfam Ataxin-2, C-terminal 0.00013
    ProfileScan Smr protein/MutS2 C-terminal 17.222
    HMMSmart Smr protein/MutS2 C-terminal 1e-12

    See the detailed result >

    AT2G26280.1

    Model type
    Protein coding
    Short Description
    CTC-interacting domain 7
    Curator Summary
    smr (Small MutS Related) domain-containing protein mRNA, complete cds
    Computational Description
    CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR