K18901

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18901

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18901

Determination of introduced cDNA(s)

  • J033131C04 - Rice Full-length cDNAs - Original: J033131C04

    full reading [+] show sequence

    Nucleotide sequence: J033131C04 - full reading 
    GGGGGAAGTT CGATCGATCC CTCACCATGG CGTCGGAGAA GGAGGCGGCG 
    CTCGCCGCCG TGCCCAACGA CAACCCCACC ATATTTGACA AGATCATCAA 
    GAAGGAAATA CCTTCCACTG TGGTATTTGA CGATGAGAAG GTTCTGGCTT 
    TCAGAGACAT AAATCCTCAA GCTCCGACCC ACATTGTGAT CATTCCCAAA 
    GTGAAGGATG GATTAACTGG CCTATCAAAG GCAGAAGAGA GGCATGTAGA 
    AATACTCGGT TACCTCCTCT ATGTTGCCAA AGTTGTTGCA AAGCAGGAGG 
    GACTTGAAGA TGGCTACCGT ATTGTCATCA ATGATGGCCC CAGTGGATGC 
    CAATCTGTTT ACCACATACA TGTACATCTC CTCGGAGGCA GGCAGATGAA 
    CTGGCCGCCG GGCTAACGAG TGCCCGTCTG TTGAACTGCC TTCATGGCAA 
    GGATGTCACA CTGCCTCTCC GTTGAATAAT TCCTGTAACT GGCATAACAA 
    TTGGTGCCCT GAACTTATGC TATATGTTTG TGGATGTTAC CAGGACAGGA 
    CATGACCATC CTGCTATGAT TTATGGACAA GATACATTGC GTTCTC

    Gene models with high sequence identity

    1. AT3G56490.1 [+] show detail - HIS triad family protein 3
      E-value: 6e-61; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Histidine triad-like motif 2.8e-32
    PatternScan Histidine triad, conserved site 0
    HMMPfam Histidine triad (HIT) protein 4.3e-28
    FPrintScan Histidine triad (HIT) protein 5.7e-20
    FPrintScan Histidine triad (HIT) protein 5.7e-20
    FPrintScan Histidine triad (HIT) protein 5.7e-20
    Gene3D Histidine triad motif 3.5e-35
    ProfileScan Histidine triad (HIT) protein 15.058
    HMMPanther Histidine triad (HIT) protein 3.3e-31

    See the detailed result >

    AT3G56490.1

    Model type
    Protein coding
    Short Description
    HIS triad family protein 3
    Curator Summary
    Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.
    Computational Description
    HIS triad family protein 3 (HIT3); FUNCTIONS IN: protein kinase C binding, adenylylsulfatase activity, zinc ion binding; INVOLVED IN: sulfur metabolic process, purine ribonucleotide metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad, conserved site (InterPro:IPR019808), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (TAIR:AT1G31160.1); Has 7957 Blast hits to 7956 proteins in 2592 species: Archae - 148; Bacteria - 4849; Metazoa - 343; Fungi - 139; Plants - 127; Viruses - 0; Other Eukaryotes - 2351 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR