K18902

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18902

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18902

Determination of introduced cDNA(s)

  • J023049D17 - Rice Full-length cDNAs - Original: J023049D17

    full reading [+] show sequence

    Nucleotide sequence: J023049D17 - full reading
    GAGGCAGAAG CAGGAGGAAG ACGAAGAGGA ATATATCTGA GTAGTGGAGT 
    CCAAGGAAAG GAACCAACTG ACCTTAGCTT AGCTTACCTT AGCTCAACCC
    CAAGCTTGAA GCTTCCACTA TAAGAACTCA CCCAGCCACA CGGCTACTTG
    GACGACGAAG CAGCAGCAGC AGCAGTAAAC AGCATCGCTC GCTCGTCTTC
    GTCGTCGTCG ATCGGCTCCG GTGAGGGTGA TCGGTCGCCG GCAGAGGCTT
    CTGATGCTGG AGAGGCCGCC GATCCTGAAG AGATACCGCG CACCGGGGTG
    GGCAGTGGTG GCTCGCTGGA AATGTCGTCG CAGCAGCAGC ACGCCGGTGA
    GGCCCCCGCC TCCGCCGCCG CCGCTGCCCG GGCGCGGCTC AGGTGGACCG
    GGCAGCTGCA CGAGCGGTTC GTCCTCGCCG TGGCGGAGCT CGGCGGCGCG
    GACAGGGCGA CGCCCAAGTC CGTGCTGAGG GCCATGGCCG TGCCGGGGCT
    CACCTTGTAC CACCTCAAGA GCCACCTCCA GAAGTACCGG CAGGCGGTGA
    GCCGCGGCGG CAATGGAGGC GGCGGAGGCA GCGGCAGCCT GAACGACCGG
    TCATCCTCGT CGGAGCGCCA ACCAGCCGAC CACGACGGCG ATAGCGCCGC
    CGATGAGCCG CGCACCATTG CTTACGACGG CGACAGCGAT GGCGATGCTA
    AAGAAGGTCT CCGTGATTCA TCCAGGAGCA TGGTGCAGAT GCAGAGGGAA
    GTCCAGAGGA AGCTCCAGGA GCAGATTGAG GTCAAGAGGC ATCTGCAACT
    GAGGATGGAG GCACAGGGGA GGTACCTGCA GTCAGTGCTA CGCAGGGCGC
    AGCAAGTCCT GGCCGACCAT AGCCTGGCAA GCTCGCCGGA GGCCGCCACG
    GCGGAGCTCT CGGAGCTCGC CTCCGCCGTG GACATCGAGT GCATGTCCTC
    CTCCTCCCCG CCGCGGCACC ACCGCCAATC CGCCGCAACC GACAGCTGCG
    TGACTACGAC GTCGTCGTCG GAGGCCGAGA GCAAGGCCGC CGGGTCCAAG
    CGGCTCCACA CCAGCGATTG CACCGTCGAG CAGCCGGTGC AGGGCAAGAG
    GGCCTTCAAC TTCCTGCAAA GGCACAACCA GGCAGATCAA GAAGAAGAAC
    AAGAAGAAGA ATATGCAGGA GCAGAGGATG GAAGCTCATC AGAGATTGAT
    CTGAACAGGT AGAGGCAGAG GAGGAAGAGA AGCAGCAGAA GCATCTGTGA
    TGATGTGCTG CTGTGCATTG CTGCAGTGGA TGATTGGTGG GGTGGCCTTC
    AAGGCTGGGG CCAAGCAACC AGGCTTTTGA GCAATGTCTG CCTGCTACTG
    CAACAGCTAC TGCTGCTGCT ACTCCTCATT CTATGATGAT ATATGTTTTA
    CTTTAACTTA TATATATATA TATATATATA TATATATATA GCTATGCAAG
    CATCTGGTTC TTGTGTTTCA CGTACCTGTA AAAAAAAATG GAATTCGAAT
    TGGTGGCTGG CCCAGCTGCA GATGCATGTG GCATGCTTGA GGTGCAAGAA
    TATATAGAAC TGTAGTAGTG TGGATTATGC AGCTAGTGAA TGATGCTTTA
    GGGACCAATG GGATTTCCAT GAAAGATGGA ATTGGTTTGC AGTGTAATTT
    AAAGAGCAAG GTTGATTTTT CACAGCTGAG CTCAGTGTGG ATCAAAGTTT
    AGTTACAGTG ATTGGAAGTT AATATGTTAG TAACAAGAGC AGTAAATAAA
    TCAGTTTGCA GTG

    Gene models with high sequence identity

    1. AT1G79430.2 [+] show detail - Homeodomain-like superfamily protein
      E-value: 4e-33; Score: 140.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 1.50000306971104e-18
    HMMPfam Myb, DNA-binding 3.90000000000001e-10
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 5.10001002358244e-21
    superfamily Homeodomain-like 5.50000546509999e-16
    Coil coiled-coil 0

    See the detailed result >

    AT1G79430.2

    Model type
    Protein coding
    Short Description
    Homeodomain-like superfamily protein
    Curator Summary
    Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.
    Computational Description
    ALTERED PHLOEM DEVELOPMENT (APL); CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G12730.1); Has 1662 Blast hits to 1649 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1644; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR