K18926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18926

Determination of introduced cDNA(s)

  • J033115N23 - Rice Full-length cDNAs - Original: J033115N23

    full reading [+] show sequence

    Nucleotide sequence: J033115N23 - full reading 
    GATCCATCTT GCCTAGTGCA AGCGTGCAAA GCCAAAATTC AAGAAATCAC 
    CTCGCTCCAT CAAGTGAGCA AGCAAAACCG ATCGAACAAG TTCCAATGGC 
    TGACGAGCCA TGGAGGCTGC CAAACATAGT GCAAGAACTG GCCGCCGGCG 
    TGCAGGAGCC ACCGAGCCGG TACCTGCAAG ACCTCGCCGG CGGTGACCAG 
    CTCGCCGGCG CCGAGATACC GGAGCCCATC CCGACCATCG ATCTCGGCCG 
    GCTGTCAGGA TCGGACGGTG CCGACGAGGC TGCCAAGCTG CGGTCGGCTC 
    TGCAGAACTG GGGCCTCTTC CTGGTTTCTA ACCATGGCGT TGAGACCTCA 
    CTGATCGATG CTGTGATCGA GGCTGCGAGG GAATTTTTTC GGCAGCCAGT 
    TGAAGAGAAG AAGAAACTGA GCAACCTGAT TGATGGCAAG CGTTTTCAGA 
    TAGAAGGGTA TGGAAATGAT CCTGTGCAAA CCAAAGATCA GATCCTGGAT 
    TGGTCTGATC GGCTGCATCT CAAGGTTGAG CCAGAGTGTG ACAGAAATCT 
    AGCCTTTTGG CCCACACATC CCAAATCTTT TAGGGATATT CTACATGAGT 
    ACACACTGAA GATCAAGACG GTCAAAAACG ATATCCTCCT CGCATTGGCC 
    AAGCTCTTGG AGCTTGATGA GGATTGCCTC CTCAACCAGT TCAGCGACAG 
    GGCCATCACT ACTGCCAGAT TCAACTACTA CTCTCCTTGT CCAAGACCTG 
    ATCTTGTGTT AGGCCTGAAG CCTCACTCTG ACCTCTGTGC TCTCACCGTT 
    CTTCTCACTG ACAAAGAAGT CGGTGGCCTG CAAGTTCTTA GAGATGGAAC 
    ATGGTACAGT GTTCCAGCTG TGCGAGATTA CTCTCTTCTG ATTAACATTG 
    GTGTTACACT GGAGATAATG ACCAATGGGA CCTTCAGGGC TCCATTGCAT 
    AGGGTGGTGA CAAATGCAGA GAGGGAGAGA ATGTCGGTGG CCATGTTCTA 
    CGCTGTGGAT GGCGAGAAGG AGATAGAGCC GGTGGCTGAG CTGCTGGGGC 
    TGAAGCAACA ATCAGCACGG TACAGGGGAA TCAAGGGCAA GGACTTGTTG 
    ATTGGACACT ATGAACATTT CTCTCGTGGT GGTAGAGTTG TCGATTCATT 
    GAAGATCTAA CGAAGGGTAA CCGCAAAGAG TGCTATTAGT ACTACTGTAC 
    TCTCTACATA GATAATATTA TACTACTTGT AAAAACTATA TGAGCCATCG 
    ATTTAGTAGG CTATAATGGT ACTTTTTCGT CTATACGAAT TATGCTATTT 
    TGT

    Gene models with high sequence identity

    1. AT5G20400.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 1e-69; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.5e-19
    Gene3D no description 8.8e-82
    superfamily Clavaminate synthase-like 1.1e-83
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 8.2e-124
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 8.2e-124

    See the detailed result >

    AT5G20400.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Curator Summary
    encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G49390.1); Has 8498 Blast hits to 8450 proteins in 980 species: Archae - 0; Bacteria - 1051; Metazoa - 121; Fungi - 1005; Plants - 4926; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR