K19115

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19115

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19115

Determination of introduced cDNA(s)

  • J033059H01 - Rice Full-length cDNAs - Original: J033059H01

    full reading [+] show sequence

    Nucleotide sequence: J033059H01 - full reading 
    ACACTATAGA ACCAGGGCTT TGCTGATCCA GGACGAGCCA ATCGAGCTCG 
    CCGACGGGCG GAGCCACCAC CACCACCACC CATCCCCGGC GCCGCCATGC 
    TGGCTTCCGC GAGGGGGTTC TGGGGGCGGC ACCGGCGGAA GATACTGGTC 
    TCGCTCGGGG TCGCCGGCGC CGGCTACGCC GCGTACAGGT ACTTGGACTC 
    GCACCGGAGG CAGCTCGTCC GGGTGGAGCA GCGCGCGCTG GAGGAGCGCG 
    CCGCCGAGGA GATCATCAAG AACCAATTGC AGACCCACTT TGAAAATGTG 
    CAGAAGATCT CAGACACGAC CACACTGCCT TTTGCTATGC ATTATCTCCG 
    TTCAAGGATC ATGGAGGAAT TGGATATTTC ACACCTGACT GAGAAGCTAA 
    TGCACGGGAA GGGAGAATCC AGTGCCCCTG CCCTGACACC AAAGGAGAAG 
    TATGACACTT GGGAGAAGAT CAAAATTTTG AGTTTCACAA GGACTGTTTC 
    TTCAATATGG GCGATGACGT TGCTTAGCTT ATATGTTAGA GTCCAGGTCA 
    CCATATTAGG CAGACATCTC TACTTAGATT TTGCTCGTGT TACGGATGGT 
    GCGCAATTAC AGGAGGGTTC TGACACCTTT AGCAAAAGCG GGCACAAATA 
    CTTTCTTGCA ACTGCTGATT ACCTTGCCAC ATATGGTATC AATGCATTAA 
    TTACAAAGAT GCAGCATGCT GCAACAGAAA TCTTGAAAGA GAAACAACTG 
    AAAGACCCTA TGGGCATTGA TGAAGTCCTA GAAACAATTT TACAAATATT 
    GAAGCAGTTC ATGGGTCTTT GTGAAGATAA CTCTTGGATA AACTACCTTG 
    TACCTGAGAA TGCCAATGTG TATGCACAGT TGATGGCTGT GTCCAGTAGT 
    GGCTTTGATG ATTCTTCACT TCTGAAGGAT GTTAGGAAGC TTGATCAGTT 
    AATGTCTGAG ACACGTATAG TTTTGTCAAG TGATGATTTC AGAAATATCA 
    TGGATAGATC ATTGAAGAAG ATAGCTAGCG TGGTGGTAGA GGACTTGGCT 
    GTACAGATTG GAGCTCCAAT TCCTCCACCT GGATTGCCCT TAGCAAAGCT 
    CTTGGCCAAA GTAGCTCAAC TGAGTTTGCC ATTGCTCGAG GAGCCAGATA 
    AGAACAAGCA CATTCAGATT ATCCGAAGTA TGCCTGAAGT GGAACTCTTT 
    TACACTTTCC TCTACGCAAA CATGCCACCA GAAACATAAT GAAGCACACT 
    AATGTGGAAT GCAATACATT GGTCCCGAAT TTTGCCATTA GAACAAGTCT 
    GATATTTTGA GCACTTTCTG AACTCCGGAA ACAGAAGGCG GAGAGAAGAC 
    TGATTTATGC TCCTTGCCCC TATGTATGCT GGAGATGTCC AGTTGTCACT 
    AACACGGATC TAACTGAGCG CAGTCCTTTC TTAATTCATT TCTCTGCTTG 
    TGTGCTTCTA GCTAGAACCA GCACTGTTTC AGCCCTTTTT TTATATATAT 
    TTTTGAGATC TTACTATGGA AATTGTACTT GACCAGGGTT TCAATGGTTT 
    ATGTAAAGTG TGATATACAT GTTACTATTT CTTTGCTCCT TCATTCAGAA 
    TGTAAAATTT TCTACCCAAT GGTTTTGAGA TTGCTGATAT

    Gene models with high sequence identity

    1. AT1G48635.1 [+] show detail - peroxin 3
      E-value: 2e-71; Score: 266.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AMINO ACID TRANSPORTER 5.2e-78
    HMMPanther AMINO ACID TRANSPORTER 5.2e-78
    Coil coiled-coil 0
    HMMPfam Peroxin-3 3.3e-62

    See the detailed result >

    AT1G48635.1

    Model type
    Protein coding
    Short Description
    peroxin 3
    Computational Description
    peroxin 3 (PEX3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peroxisome organization; LOCATED IN: mitochondrion, peroxisome, integral to peroxisomal membrane; CONTAINS InterPro DOMAIN/s: Peroxin-3 (InterPro:IPR006966); BEST Arabidopsis thaliana protein match is: peroxin 3-1 (TAIR:AT3G18160.1); Has 302 Blast hits to 302 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 122; Plants - 49; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR