K19201

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19201

Determination of introduced cDNA(s)

  • J023099E22 - Rice Full-length cDNAs - Original: J023099E22

    full reading [+] show sequence

    Nucleotide sequence: J023099E22 - full reading 
    GACATCTCTC CAAAGCCTCC GGCTCCACTC CAACTCCTCT CGCCTCCGCG 
    GCTCCGCCCA TTTCGCGGGT CGCCGGAGCA GCAGCAGCCG CCGCGCCAGA 
    TCTCGAACCT TCTAGAAGCT TCCGCCCGCT TCCACCCATC TCCCCCGAGG 
    GCGCCTGGAT CCCGAACCTT CTAGGCGTCG GCGGCCGGGG AAGGCGCGAG 
    GGGAGGCGGA CCACGGGATC TGCTTCGAAG CCCCTCGCCT CCTCTGGAAC 
    CTTCCGGGCG CGGCGCGGCG GGATGGCGAG TGCAAAAGTG TCGCACCCCG 
    TTAAATCGGC CTCCGAGGAG TCCAAAGTAC TCGTGGTGGA GAATGGGAAG 
    ATGGTTGATG TTCAGGACAA GGAAATCACC ATGGAAGGCC TCTGTTCCAT 
    AAGTTCTTAT GACCAGTGGG CACGGATCCC TGTTTCTGGA CCGCTTCCGA 
    AACCTCGCTA CAAGCATGCA GCTGCTGTGG TTCAGGAAAA GATGTATGTT 
    TTTGGTGGAA ATCACAATGG CCGTTACCTT GGTGACATGC AGGTTCTGGA 
    TTTCAAATGT TTATCATGGT CGAAGCTAGA AGCTAAAATA CAATCAGAAG 
    AACCTTCAGA CTTGACTGGA ACAGCTTCGC TTCCTCCTTG TGCTGGTCAT 
    GCACTGGTTC CATGGGGAAA CAAGATCCTC TGTCTTGCAG GACACACAAG 
    GGAACCTACA GAAAGTCTCA GTGTTAAGGA GTTTGATCCA CAAACTTGCA 
    CCTGGTCAAC CTTGCGCACT TATGGCAGAT CACCGAGCTC ATGCGGTGGC 
    CAATCAGTGA CTCTTGTTGG AGGCACATTA GTAGTGTTTG GAGGTGAAGG 
    TGATGGGAGA TCCCTTCTGA ATGACCTGCA CGTTCTTGAT CTCGAGACCA 
    TGACTTGGGA TGAATTTGAG ACCACAGGCA CACCCCCTTC TCCAAGGTCA 
    GAGCATGCTG CTGCGTGCTA TGCTGATCGT TATCTCTTGA TATTTGGCGG 
    GGGTTCTCAT TCTACATGTT TCAGTGATCT ACATCTCCTT GACATGCAGA 
    CGATGGAATG GTCAAGACCA GAACATCAGG GTATTACTCC CGAACCAAGA 
    GCAGGGCATG CAGGTGTTAC GGTTGGTGAG AACTGGTTTA TTACTGGAGG 
    TGGTAATAAC AAGAAAGGTG TCCCAGAAAC ACTTGTACTT AACATGTCAA 
    CATTTGTATG GTCAGTCGTT ACTGGTCTTG AAGGCCGTGC ACCCCCAACA 
    AGTGAGGGCT CAAGTTTAGT GCTGCACAAA GTTAATGGTG AAGATTTTCT 
    GGTGTCATTT GGAGGATACA GTGGACGTTA CAGTAATGAG ATTTATGCTC 
    TCAAGTCAAG TCGAAAGTCC GGTGTGCCAT CTGGGCAACT AAATGAACCT 
    GAAACAAATG GATTGGCCTC TGTGGCAGAA AATTCTAGCA GAGGGGTCAT 
    ATTTGAAATT GAAGAACTTC AAGATGAAAA GACTATTAAG AGGGCAGATA 
    CAAGCAAAAC TTTGTTGCAA GCAGTTAAGG GTGAGAAGAG TCATATAGAA 
    GAAAAACTTA ACCAGGAAGA GCTGCAGAGT TCCAGACTGA AGCAGGAATT 
    AGCTAACGTG GAGACAAAAA ATGTGGAACT TACAAAGGAA CTTGACTTAG 
    TCCGCAATCA ACTTTCTGCT GAAGAAGCAA GGGCGTCGCA ACTTGAGAAC 
    GAAATTTCGG ATCTTCAACA AAGGCTGCAG AAGATGGAGA CCCTGGAAAA 
    GGAGTCCGAA TCGCTTCGGC TTGAAAAGGA TGCAGAGTCC GACGATTCAT 
    CTTCAGGCAG CAACCAGCGG CCTGCTGATA AGGGCTTCTG GAGGTGGAAT 
    GGATAAAAAT TCATCGATAC AGGTAGTAGC ATACTAGCAT TGGATGTATG 
    GAGGATATTT CCTGCAGAGT TGCACATTCT TTCAATTTTT GCCCATTTCT 
    TTTTTCCCCT GGAGAGCCCA GTATTCACAA GTAGATCAAA TATCGAAAAA 
    TGTTTACTCA CAGAGAAACA GGATGATAGC AAATCGCGGT TCCATCAAGA 
    GAACTGATCA ACCATGAGAA GAATTTAATA AAGTTTACAG GTGGTTCTAT 
    TTTTTTCC

    Gene models with high sequence identity

    1. AT3G05420.2 [+] show detail - acyl-CoA binding protein 4
      E-value: 6e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Galactose oxidase/kelch, beta-propeller 5.5e-37
    HMMPanther RANGAP1-INTERACTING PROTEIN-RELATED 8.8e-138
    HMMPanther KELCH REPEAT DOMAIN 8.8e-138
    HMMPfam Kelch repeat type 2 9.8e-08
    HMMPfam Kelch repeat type 2 6.6e-06
    Gene3D Kelch-type beta propeller 2.8e-40

    See the detailed result >

    AT3G05420.2

    Model type
    Protein coding
    Short Description
    acyl-CoA binding protein 4
    Curator Summary
    Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.
    Computational Description
    acyl-CoA binding protein 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 5 (TAIR:AT5G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR