K19202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19202

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19202

Determination of introduced cDNA(s)

  • J013075K23 - Rice Full-length cDNAs - Original: J013075K23

    full reading [+] show sequence

    Nucleotide sequence: J013075K23 - full reading 
    GAATGGAAAC GCCCATTAAT GGCAAGCTTA GCCCCCCGCG CTAATCGCCT 
    CCTCCTACTA ATTCCTTGCG TCTCGCTTCG GCCACCGCCC ACCACCACCT 
    CCTCTCGCCT CTCGCCCCCG CATCGCCGCT TCCTCCCTCC CCCACCTCAC 
    GAGACCGTTT TTTTTCTTTT TTTTTGTGTT ACCGCCATGG CCGCCGCGTT 
    GACCCGCTCG TCGTCCGTCC GTTCCGCCAT CCGACGGCTC GGATCCTCCC 
    GCGGCCGCTG GCGGACTCCG GGCAGGCGGG GAATGAGGTG GCGGCGTTCG 
    GCGACGTCGC GGAGGAGGAG GAGCGGGAGG AGAAGCGCAG GTTCCTGTTC 
    GGAGACTCGT ATCGCAGAAG GGTGTTCTTC AACTACGAGA AGAGGATTCG 
    GACGCGCAGC CCTCCTGAAA AGATCTTTGA ATATTTCGCG TCCATCCGGA 
    ACCCAGAGGG TGAAGTTTAC ATGTTACCCG CCGATTTGAT GAGGGCGGTT 
    GTCCCCGTTT TTCCTCCATC TGAATCGAAA ATTGTCAGGG AAGGGAGTCT 
    CAGGGGAGAG CGCAACCCTG GCGAGCTACA CTGTGCCCCG TCTGAATTTT 
    TCATGCTGTT TGACACGAAC GGAGATGGGC TCATCTCCTT TGCCGAGTAC 
    ATCTTTTTTG TGACATTGCT TAGCATTCCT GAATCAAGTT TCAACATAGC 
    TTTCAAGATG TTTGACCTTG ACCACAGTGG GGAAATAGAC AAAGAAGAGT 
    TTAAGAAAGT AATGGCACTG ATGCGGTCCT ATCATAGGCA AGGAGCTGCC 
    CATAGGGATG GTTTACGTTT TGGTCTTAAG GTTGGTCAGT CAGTGGAAAA 
    TGGTGGACTG GTTGAGTACT TCTTCGGCAA GGATGGCAAT GAACAGTTAC 
    GCTATGATAA GTTCTCCAAT TTTTTGAAGC AATTGCATGA TGAGATTGTT 
    CGCTTGGAAT TCAGTCACTA TGATGTCAAA TCATCCAAGA CAATATCTGT 
    GAAGGACTTT GCATTATCCA TGGTTGCTTC TGCAGATATG AATCACATAA 
    ACAAGCTACT TGACAGAGTT GATGATTTTG ATGATTATCC TGATCTCAAG 
    GATTTGCGCA TTACCTTTGA GGAGTTCAAG GCTTTTGCTG ATCTGCGGCG 
    AAAATTAGAA CCATTTGCAA TGGCAATCTT CAGCTATGGC AAAGTAAACG 
    GTTTGCTGAC CAAGCAGGAT CTAAAACGTG CAGCAACTCA TGTTTGTGAA 
    GTGGACTTGA CTGATAAAGT GGTGGACGTC ATTTTCCTTG TGTTCGATGC 
    AAACCGGGAT GGGAGCCTTA GCGCAGATGA GTTCTTGAGG GCATTGCAAA 
    GACGAGAAAG TGATATTCGC CAGCCAGCTT CTTCAGGTTT AATGGGAGTA 
    TTTACCTGTT TGTTGAACTG TACAAAGTGT TCTCTTCAGC AGACTGTGAT 
    CTAGTGCTGG GGAGCGAAAA CGACCACCCA CTGGAGTTCT GCAAACACGA 
    TTTTGCTGTA AATAGTCTTG CTTATCAAAG TTACCGAAAC ATGTAGCAGC 
    TGCAAATAAC ATGTTTCGCA CTAAGCCCAA GGCTTCGCTG ACAGAACTCT 
    ACTCCACTAA TGTAAAATGA ACCTATGACA TGGAACCTCG TTAACTGTCT 
    ACGCCTTGAT TCAGTTACTA TATCCTTACA TGTCTACGTT TGGATATCAA 
    TCTTGTTGGT

    Gene models with high sequence identity

    1. AT4G32060.1 [+] show detail - calcium-binding EF hand family protein
      E-value: 2e-137; Score: 486.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMSmart Calcium-binding EF-hand 0.008
    HMMSmart Calcium-binding EF-hand 0.00013
    HMMSmart Calcium-binding EF-hand 0.0051
    superfamily EF-hand 7.7e-18
    superfamily EF-hand 4.7e-14
    HMMPfam EF-hand 3.9e-07
    ProfileScan EF-HAND 2 13.091
    ProfileScan EF-HAND 2 7.651
    ProfileScan EF-HAND 2 6.814
    ProfileScan EF-HAND 2 12.393
    HMMPanther CALCIUM BINDING ATOPY-RELATED AUTOANTIGEN 1 3.3e-125
    HMMPanther EF HAND DOMAIN FAMILY A1,A2-RELATED 3.3e-125
    Gene3D EF-hand-like domain 9.3e-10
    Gene3D EF-hand-like domain 7.3e-08

    See the detailed result >

    AT4G32060.1

    Model type
    Protein coding
    Short Description
    calcium-binding EF hand family protein
    Computational Description
    calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); Has 1138 Blast hits to 1114 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 850; Fungi - 83; Plants - 103; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR