K19208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19208

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19208

Determination of introduced cDNA(s)

  • J013000C07 - Rice Full-length cDNAs - Original: J013000C07

    full reading [+] show sequence

    Nucleotide sequence: J013000C07 - full reading
    GCTCCTTCCT CCGCTCGCCG TCTTCTCGAC GACGACCCGC GGCCACCGCC 
    GCGCCGCCCT CCTCGCCGCC GCCGCCGCCG CCGTCTCCGC AGAATCTGAT
    CGATGGCGCC GTCGTCGACG TCGTCGGAGG GTGCCTCCGA CGAGTGGTTG
    CCACCCAGCC GGCGGCCGGA GCTGGCGGAC GTGGTCCCCG TGACGCAGGA
    CGACGGGCCC CACCCCGTGG TGGCCATCGC CTACCGGGAC GAGTTCCGCG
    AGGTCATGGA CTACTTCCGC GCCCTCTACT TCGCCGGCGA GCGCAGCGTC
    CGCGCCCTCC ACCTCACCGC CGAGGTCATC GACCTTAATC CCGGCAACTA
    CACGGTGTGG CATTTTAGGC GTCTTGTTCT AGAGGCACTG GATGCTGATC
    TGCGTGAGGA AATGGATTTT GTGGACCGAA TTGCTGAATG TAACCCAAAA
    AATTATCAAA TCTGGCATCA CAAGAGATGG CTTGCGGAGA AATTAGGACC
    AGATATTGCA AATAAAGAGC ACGAATTTAC AAGGAAGATA CTTTCTATGG
    ATGCTAAAAA TTACCATGCT TGGTCTCATA GGCAGTGGGT TCTTCAAGCA
    CTGGGTGGAT GGGAGACTGA ACTACAGTAT TGCAACCAGC TGCTTGAGGA
    AGACGTCTTC AATAATTCAG CTTGGAATCA GAGATACCTT GTAATAACAA
    GTTCACCACT TCTTGGAGGC CTTGCAGCAA TGCGTGACTC GGAAGTGGAT
    TACACAGTTG GGGCTATTCT GGCTAACCCT CAGAATGAAA GCCCCTGGAG
    ATACCTCAAA GGCCTGTACA AGGGTGAAAA TAACTTGCTG ATGGCTGATG
    AGCGCATCTC TGATGTTTGT CTCAAGGTCC TGAAACATGA TTCGACCTGC
    GTATTTGCTT TGAGCTTGCT GCTCGATCTT CTTCAAATTG GTTTACAACC
    TTCAGATGAA CTCAAAGGAA CTATCGAAGC AATAAAGAAC TCTGATCCTG
    AAGCAGATGA AGCAGTAGAT GCTGATCTTG CGACTGCAAT CTGCTCAATA
    TTGCAGAGAT GTGATCCCCT GCGGATAAAT TACTGGTCCT GGTACAGGAC
    CACTATTTCT TCTCAAACCT GAAGCATGCA GTGGCCTCCA TGAGGTCATA
    ATGGAGATAT CTTCTATCTT CGTGTGATTC TGGGCGTTGA GGTGCCTAGC
    TACATTTGTT ATGAACTTTC CTTGGGCATA ACTGATCACT GATATTACTC
    C

    Gene models with high sequence identity

    1. AT3G59380.1 [+] show detail - farnesyltransferase A
      E-value: 8e-116; Score: 414.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein prenyltransferase, alpha subunit 2.2e-09
    HMMPfam Protein prenyltransferase, alpha subunit 3.3e-11
    HMMPfam Protein prenyltransferase, alpha subunit 6.7e-11
    HMMPfam Protein prenyltransferase, alpha subunit 2.2e-08
    HMMPfam Protein prenyltransferase, alpha subunit 8.1e-05
    ProfileScan Protein prenyltransferase, alpha subunit 15.789
    ProfileScan Protein prenyltransferase, alpha subunit 17.152
    ProfileScan Protein prenyltransferase, alpha subunit 16.984
    ProfileScan Protein prenyltransferase, alpha subunit 13.86
    ProfileScan Protein prenyltransferase, alpha subunit 11.647
    Gene3D Protein prenyltransferase 2.4e-94
    HMMPanther PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT 9.1e-83
    HMMPanther PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB 9.1e-83
    superfamily Protein prenylyltransferase 5.9e-70

    See the detailed result >

    AT3G59380.1

    Model type
    Protein coding
    Short Description
    farnesyltransferase A
    Curator Summary
    Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.
    Computational Description
    farnesyltransferase A (FTA); CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1351 Blast hits to 1070 proteins in 249 species: Archae - 32; Bacteria - 58; Metazoa - 584; Fungi - 296; Plants - 191; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR