K19212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19212

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19212

Determination of introduced cDNA(s)

  • J013045G10 - Rice Full-length cDNAs - Original: J013045G10

    full reading [+] show sequence

    Nucleotide sequence: J013045G10 - full reading 
    GTCCCTCTCC TCCTCACCTG GCGCGCCGAA GCTTCTCTCC TCTCTCTCAA 
    CTCCGGCGAG AGGAGGAGGC GGCGGTGGGG CGTTCGTCGG GAGAGAGACC 
    AGGGCCGGGG GGCTAGGGTT CGGCCGTTCA GAGAGGCGGC GGCTGAGGAG 
    GAGGAGGAGG AGGAGGAGGG GGTGAGGAGA GATGTCGACG CCGGCGAGGA 
    AGCGGCTGAT GCGGGACTTC AAGCGGCTGC AGCAGGACCC GCCCGCCGGA 
    ATCAGCGGCG CGCCGCACGA CAACAACATC ATGCTCTGGA ACGCCGTCAT 
    ATTCGGACCG GATGACACGC CGTGGGATGG AGGCACGTTC AAGCTGACAC 
    TACAATTTAC AGAAGATTAT CCCAACAAAC CACCAGTTGT TCGGTTTGTC 
    TCAAGGATGT TTCACCCAAA TATTTATGCA GATGGAAGTA TCTGCTTGGA 
    TATCCTACAA AATCAATGGA GCCCTATATA TGATGTTGCT GCGATATTGA 
    CCTCTATCCA GTCCCTGCTC TGTGATCCAA ACCCAAACTC CCCTGCAAAC 
    TCCGAAGCAG CCAGACTGTT CAGCGAGAAC AAGCGCGAGT ACAACCGCAA 
    AGTCCGCGAG ATTGTGGAGC AGAGCTGGAC GGCCGACTAA GCCAAGGACA 
    TGATTGAGTT GCAGTTTCTG CAACAAGCTT CTCCTAAAGA TATGCAATTC 
    TGGCTTTCCC GGTCTGTATC ACCTACTAAA AACATAAAAA ATCTTCAGTT 
    GTTGTAATTC CTGAGCTTGA TCCCCTGCCT TCCCCTACTT GTTTTCCCAA 
    TGTAGTGGCT ACCTATTTGA TGAATTTATA AGGTATTGAT GCTTATG

    Gene models with high sequence identity

    1. AT2G02760.1 [+] show detail - ubiquiting-conjugating enzyme 2
      E-value: 3e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-conjugating enzyme/RWD-like 1.1e-62
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 7.2e-57
    HMMSmart Ubiquitin-conjugating enzyme, E2 5.4e-69
    ProfileScan Ubiquitin-conjugating enzyme, E2 47.115
    HMMPfam Ubiquitin-conjugating enzyme, E2 2.6e-52
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMPanther UBIQUITIN-CONJUGATING ENZYME RAD6 7.3e-116
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 7.3e-116
    Coil coiled-coil 0

    See the detailed result >

    AT2G02760.1

    Model type
    Protein coding
    Short Description
    ubiquiting-conjugating enzyme 2
    Curator Summary
    ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene.
    Computational Description
    ubiquiting-conjugating enzyme 2 (UBC2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin carrier protein 1 (TAIR:AT1G14400.2); Has 10642 Blast hits to 10588 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4556; Fungi - 2331; Plants - 2015; Viruses - 26; Other Eukaryotes - 1712 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR