K19306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19306

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19306

Determination of introduced cDNA(s)

  • J023009D02 - Rice Full-length cDNAs - Original: J023009D02

    full reading [+] show sequence

    Nucleotide sequence: J023009D02 - full reading 
    GGCCCACCAA CGTCGCTTCC CCGGCACCTC ACCATGGACA CCGCCTCCGT 
    CACCGGTGGC GAGCACAAGG GGAAGGAGAA GACGTGCCGG GTGTGCGGCG 
    AGGAGGTGGC GGCGAGGGAG GACGGGAAGC CGTTCGTGGC GTGCGCCGAG 
    TGCGGCTTCC CGGTGTGCAA GCCCTGCTAC GAGTACGAGC GCAGCGAGGG 
    CACCCAGTGC TGCCCCCAGT GCAACACCCG CTACAAGCGC CACAAAGGGT 
    GCCCACGGGT GGAAGGCGAC GAGGACGACG GCGGCGACAT GGACGACTTC 
    GAGGAGGAGT TCCAGATCAA GAGCCCCACC AAGCAGAAAC CCCCCCACGA 
    GCCCGTCAAC TTCGACGTCT ACTCGGAGAA CGGCGAGCAG CCGGCACAGA 
    AGTGGCGCCC TGGAGGCCCG GCGCTCTCTT CCTTCACCGG AAGCGTGGCT 
    GGGAAGGATC TGGAGCAGGA GAGGGAGATG GAGGGTGGCA TGGAGTGGAA 
    GGACAGGATC GACAAGTGGA AGACGAAGCA GGAGAAGCGG GGCAAGCTCA 
    ACCGCGACGA CAGCGACGAC GACGACGACA AGAACGACGA CGAGTACATG 
    CTGCTCGCGG AGGCGAGGCA GCCGCTGTGG AGGAAGGTGC CGATCCCGTC 
    GAGCAAGATC AACCCGTACC GGATCGTGAT CGTGCTCCGG CTGGTGGTGC 
    TCTGCTTCTT CCTCAAGTTC CGGATCACGA CGCCGGCGAT GGACGCGGTG 
    CCGCTGTGGC TGGCCTCGGT GATCTGCGAG CTGTGGTTCG CGCTGTCGTG 
    GATCCTCGAC CAGCTGCCCA AGTGGTCGCC GGTGACGAGG GAGACGTACC 
    TGGACCGGCT GGCCCTCCGG TACGAGCGCG ACGGCGAGCC GTGCCGCCTG 
    GCCCCGATCG ATTTCTTCGT CAGCACGGTG GACCCGCTCA AGGAGCCGCC 
    CATCATCACC GCCAACACCG TGCTGTCCAT CCTCGCCGTC GACTACCCCG 
    TCGACCGCGT CTCCTGCTAC GTCTCCGACG ACGGCGCGTC CATGCTGCTC 
    TTCGACACGC TCTCCGAGAC CGCCGAGTTC GCCCGCCGGT GGGTCCCCTT 
    CTGCAAGAAG TTCACCATCG AGCCCCGCGC CCCCGAGTTC TACTTCTCCC 
    AGAAGATCGA CTACCTCAAG GACAAGGTCC AGCCCACCTT CGTCAAAGAA 
    CGCCGCGCCA TGAAGAGAGA GTATGAGGAG TTCAAGGTGA GGATAAACGC 
    GCTGGTGGCG AAGGCGCAGA AGAAGCCGGA GGAAGGGTGG GTGATGCAGG 
    ACGGGACGCC ATGGCCGGGG AACAACACGA GGGACCACCC GGGGATGATC 
    CAGGTGTACC TGGGCAGCCA GGGCGCGCTC GACGTCGAGG GCAGCGAGCT 
    GCCGCGGCTG GTGTACGTGT CCCGCGAGAA GCGGCCCGGC TACAACCACC 
    ACAAGAAGGC CGGCGCCATG AACTCCCTCG TTCGCGTCTC CGCCGTGCTT 
    ACCAACGCCC CCTTCATCCT CAACCTCGAC TGCGACCACT ACGTCAACAA 
    CAGCAAGGCC GTCCGCGAGG CCATGTGCTT CCTCATGGAC AAGCAGCTCG 
    GCAAGAAGCT GTGCTACGTC CAGTTCCCCC AGCGCTTCGA CGGCATCGAC 
    CGCCACGATC GCTACGCCAA CCGCAACACC GTCTTCTTCG ACATCAACAT 
    GAAGGGGCTG GACGGGATAC AGGGGCCGGT GTACGTGGGG ACGGGGACGG 
    TGTTCAACAG GCAGGCGCTG TACGGATACG ACCCGCCGCG GCCGGAGAAG 
    AGGCCGAAGA TGACGTGCGA CTGCTGGCCG TCGTGGTGCT GCTGCTGCTG 
    CTGCTTCGGC GGGGGGAAGC GCGGCAAGTC GCACAAGAAC AAGAAGGGCG 
    GCGGCGGCGG CGAGGGCGGC GGCCTCGACG AGCCGCGCCG CGGGCTGCTC 
    GGGTTCTACA AGAAGAGGAG CAAGAAGGAC AAGCTCGGCG GCGGCGCGGC 
    GTCGCTCGCC GGAGGGAAGA AAGGGTACCG GAAGCACCAG CGCGGGTTCG 
    AGCTGGAGGA GATCGAGGAG GGCCTCGAGG GGTACGACGA GCTGGAGCGC 
    TCGTCGCTCA TGTCGCAGAA GAGCTTCGAG AAGCGGTTCG GCCAGTCGCC 
    GGTGTTCATC GCCTCCACCC TCGTCGAGGA CGGCGGCCTC CCCCAGGGCG 
    CCGCCGCCGA CCCCGCCGCC CTCATCAAGG AGGCCATCCA CGTCATCAGC 
    TGCGGCTACG AGGAGAAGAC CGAGTGGGGC AAGGAGATTG GGTGGATCTA 
    CGGGTCGGTG ACGGAGGACA TCTTAACGGG GTTCAAGATG CATTGCCGTG 
    GGTGGAAGTC GGTGTACTGC ACGCCGGCGA GGGCGGCATT CAAGGGGTCG 
    GCGCCCATCA ACCTGTCGGA TCGTCTGCAC CAGGTGCTCC GGTGGGCGCT 
    CGGCTCCGTC GAGATCTTCA TGAGCCGCCA TTGCCCGCTC TGGTACGCCT 
    ATGGCGGCCG CCTCAAGTGG CTCGAGCGCT TCGCCTACAC CAACACCATC 
    GTCTACCCCT TCACCTCCAT TCCCCTCCTC GCCTACTGCA CCATCCCCGC 
    CGTCTGCCTC CTCACCGGCA AGTTCATCAT CCCCACGCTT AACAATTTGG 
    CGAGCATATG GTTCATAGCG CTTTTCCTGT CGATCATCGC GACGGGGGTG 
    CTGGAGCTGC GGTGGAGCGG GGTGAGCATC GAGGACTGGT GGAGGAACGA 
    GCAGTTCTGG GTGATCGGCG GCGTGTCGGC GCACCTGTTC GCCGTGTTCC 
    AGGGCCTCCT CAAGGTGCTC GGCGGCGTGG ACACCAACTT CACGGTGACG 
    TCCAAGGCCG CCGCCGACGA GACCGACGCG TTCGGCGAGC TCTACCTGTT 
    CAAGTGGACG ACGCTGCTGG TGCCGCCGAC GACGCTGATC ATCATCAACA 
    TGGTGGGGAT CGTCGCCGGC GTGTCGGACG CCGTGAACAA CGGGTACGGG 
    TCGTGGGGCC CGCTGTTCGG GAAGCTCTTC TTCTCCTTCT GGGTCATCCT 
    CCACCTCTAC CCCTTCCTCA AGGGGCTCAT GGGGAGGCAG AACCGGACGC 
    CCACCATTGT CGTGCTCTGG TCCATCCTCC TCGCCTCCAT CTTCTCCCTC 
    GTCTGGGTCA GGATCGACCC CTTCATCCCC AAGCCCAAGG GCCCCGTCCT 
    CAAGCCATGC GGGGTCTCGT GCTGAGCTGC TGCTGCTACT TCTCTGTGTC 
    TCTGCATTTT GCAAGAGGGA TGACCGGATG GATGATTCTT GTTGTATGGA 
    GTATTTTGAC TTGTTCATGT ACAAGTTTTT GTGAGTGGGA TAAAAGTGTT 
    TTGGGGGTAA AATTTGTAAG AACTGAGGTG GAGATTATAC TCGAATTTAA 
    GAACAATTGT TTTTGAATTT TCTTTT

    Gene models with high sequence identity

    1. AT5G44030.1 [+] show detail - cellulose synthase A4
      E-value: 0; Score: 660.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 1.7e-10
    ProfileScan Zinc finger, RING-type 8.594
    Coil coiled-coil 0
    Gene3D no description 1.5e-25
    HMMPfam Cellulose synthase 0
    HMMPanther TGACG-MOTIF-BINDING FACTOR 7.8e-17
    HMMPanther X-BOX TRANSCRIPTION FACTOR-RELATED 7.8e-17

    See the detailed result >

    AT5G44030.1

    Model type
    Protein coding
    Short Description
    cellulose synthase A4
    Curator Summary
    Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.
    Computational Description
    cellulose synthase A4 (CESA4); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, defense response to bacterium, defense response to fungus, secondary cell wall biogenesis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 3263 Blast hits to 2832 proteins in 640 species: Archae - 9; Bacteria - 1071; Metazoa - 1; Fungi - 31; Plants - 2051; Viruses - 7; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR