K19413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19413

Determination of introduced cDNA(s)

  • J013002F11 - Rice Full-length cDNAs - Original: J013002F11

    full reading [+] show sequence

    Nucleotide sequence: J013002F11 - full reading
    GGCTTCTCCT CTTCCATCTC ACAGAGCTTC CAAATTCCAA GAACTGAAGA 
    AAAAACTTTC AAGAACATCT GAAACATGGC ACTGCCCATC AAGCTTCTCC
    TAGTCTCTGC ATTTCTCTCC CTCCTCCTCC TGATCCAAGG TAGGATACAT
    CTTTCTTGCC GGTTCTTGGT GTTCTCTGAT CAAAGACACC ATGCATCCAT
    CTTTGTTTCT GACTGGCTGT GGAATTAGGC GCGGCGGCGA GGTCGTCGCC
    GGCGGCGGGG AAGTGCGCGG CGGCGAGCGT GGAGGTGGAG CAGGCGAACA
    CCGGCGAGAA GGCGGGGTAC GACCCGGTGT TCGAGGTGAC GGTGCGCAAC
    CGGTGCGCGT GCGCGGCGCG CGGCGTGCGC CTCCGCTCCG AGGGGTTCGC
    GAGCTCCGTC GCCGTCGACC CGCGGCTGTT CCGCCTCGAC CGCGACGCCG
    GCGACTACCT CGTCGGCGAC GGCCGCCGCA TCGAGCCCTC CGCCGCCGTC
    ACGTTCCGCT ACGCCTGGGA CCGCGCCTTC CGCATGGCGC CGGCCGCCCT
    GCTCGACGAC TGCTCCTGAA AAACCAACCA TCATCGATCG TCCACTGATT
    GATTCTCTGA TCGAGATTCA AGAACAACCG GTGATAAATG TGTTTATTAG
    CAGCGTGTAG TGACAGTGAA TTAAGGAGTA ATTAGTAGTA GTATTTACTT
    AGTTGAGAGT GTTCTTGGGT ATTTGCTGGC TTGCTGCTAA TGGCATCAAT
    GGCATGAATG ATCATTGGGC ATTGGCATGT GCTGAAGAAC ACAAATCGGA
    TTCAGAAAAA AAAAGTGAAA GGTGGATGAG GCTTTTTTGT TTTTAGCTGA
    GAAGATCAAG TGTCTCAGTT TCAGGTGACG GGAATGTATG GTTTGGTTGG
    TTGTTTGCTT CCCAGTAAAG GAGCTTAGTG GCTAAGTCTT GGATTAATTT
    AACCCCTGTG TTCAACTTC

    Gene models with high sequence identity

    1. AT4G32110.1 [+] show detail - Beta-1,3-N-Acetylglucosaminyltransferase family protein
      E-value: 5e-07; Score: 52.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLYCOSYLTRANSFERASE FAMILY 31-RELATED 3.5e-05
    HMMPanther Glycosyl transferase, family 31 3.5e-05

    See the detailed result >

    AT4G32110.1

    Model type
    Protein coding
    Short Description
    Beta-1,3-N-Acetylglucosaminyltransferase family protein
    Computational Description
    Beta-1,3-N-Acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 31 (InterPro:IPR002659); BEST Arabidopsis thaliana protein match is: Beta-1,3-N-Acetylglucosaminyltransferase family protein (TAIR:AT4G32105.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR