K19416

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19416

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19416

Determination of introduced cDNA(s)

  • J033123E09 - Rice Full-length cDNAs - Original: J033123E09

    full reading [+] show sequence

    Nucleotide sequence: J033123E09 - full reading 
    GAGTATTCCT CCCCCTTTTT CTCCTCCTCC TCCTCCGCGA GTGTGAGCCT 
    AGAAACTGCG GCGGTTTTGG GCGCGATTTG GTTTCCAACC ACCTCGATTG 
    GAGTGCGCCG GCGGTGATCC GGTTGGTCCA TGGCCGGTGG TGGAGGTAGG 
    TGAGGGGGAG GGCGGCGGCG GCGGAGGAGG AGGGGTTTGG GGGGTCGTGG 
    GATGTGGGAG GTGGCGTGGT GGAGGCCCGG GACGTGGGGC GGGCTGGCGA 
    TGCGGGTGGG GCAGGTCGCC TTCGCCGGAG CCTCCATCGG CGTCATGGCG 
    TCCGGGGCCG GCTTCGCCAA CTACACGGCC TTCTGCTACT TGATTGCATC 
    AATGGGATTA CAATCATTGT GGAGCTTGGG ACTTGCATGC CTTGACGTGT 
    ATGTATGCCT TGACAGTCAA AAGGGATCTC AACAATGCTC TTCTCGTGAG 
    TTTGTTTGTC ATTGGAGACT GGGTAACTGC ACTTCTGTCC TTTGCTGCAT 
    CTTGCTCAGC TGGAGGTGTT ATGGTTCTGT TTAAAAGGGA CGTGCTTTTC 
    TGCAGAAGGT ATCCACAACT GCCTTGTGGG AGATTCGAAC TTGCTGTAGC 
    GCTTGCATTT TTGTCTTGGG CACTTAGTGC TACATCAGCC ATTATCATGT 
    TCTGTCTCCT TGCTGCATTC TAGTCTTGCA TATAATCCTG TGTAAGTTCT 
    GTTTATAGTG CTGCCTTTTT TCTGTTTTAT CTTGTTAGCT TTGATTTTGT 
    ATAGGATCAT TTTCAAGAAT ATGTAGTGAA CCACACGACC GAAAAGTGGA 
    AATGCTGGGG AAGTTC

    Gene models with high sequence identity

    1. AT5G02060.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 1e-41; Score: 89.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Uncharacterised protein family UPF0497, trans-membrane plant 1.8e-13
    HMMPfam Uncharacterised protein family UPF0497, trans-membrane plant 3.6e-15

    See the detailed result >

    AT5G02060.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0497)
    Computational Description
    Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G53850.1); Has 207 Blast hits to 207 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR