K19422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19422

Determination of introduced cDNA(s)

  • J013050D20 - Rice Full-length cDNAs - Original: J013050D20

    full reading [+] show sequence

    Nucleotide sequence: J013050D20 - full reading 
    GACGTATTCA TCGGGCTGCT TCTCCTCTCC CTGCACGCTC CTCCATATTC 
    CGCTGCCGTC GACGATACTC TCGCAGCGGG TCAAGTGCTC GCCGTCGGTG 
    AGAAGCTCGT CTCGAGGAAC GGCAAGTTCG CGCTCGGCTT CTTCCAGCCA 
    AGTGCAATAG CCATCAGTAA GTCATCCAAC TACACTAACG CCCTCGGTTG 
    GTACCTTGCC ATTTGGTTCA ACAAGATCCC GGTTTTCACC ACTGTATGGG 
    TCGCCAATAG GGAGAGGCCA ATCACCGTTC CTCGGCTCAA TTCAACATGG 
    CTAAAAATGT CAGGAGATGG CAACCTCTAC ATCCTAGACC ATGCCACTAA 
    TTCCATCATC TGGTCCACTG ATCACGTCGT TAATACGACA ACGGAAACCG 
    GCATGAACAC GAGTGCCACT CTCCTGAATA GCGGAAACCT CGTAATACGA 
    AACCCGTCAG GTGTAGTCTC GTGGCAGAGC TTCGACAACC CAACTGACGT 
    TGTTCTTCCC GGTGCCAAGT TTGGCTGGAA CAAGGCCACT GGGTTGAATC 
    GCCTTGGGAT ATCAAAGAAG AGCCTCATCG ATCCAGGCCT TGGATCATAC 
    AGTGTTGAAC TAGACACGAC TGGTGCCAGA GGGCTGATCC TCAAGCATCG 
    CAACCCTTCC ATGGAGTACT GGTCATCTGA TAGAGCACTG ATTATACCGG 
    TACTTAAGTC TTTGTTTGAG ATGGATCCAC GGACCAGAGG CTTGATTACC 
    CCGGCATACG TCGATAATAG TGAAGAGGAG TACTATATCT ACACTATGTC 
    GGATGAATCA TCCTCTGTGT TTGTGTCGTT AGATGTTAAT GGGCAGATCA 
    AGATGTATGT ATGGTCACGA GCAAACCAGT CTTGGCAAAG CATATATGCA 
    CAGCCTGTTG ATCCTTGCAC CCCCTCTGCT ACCTGTGGAC CTTTCACCAT 
    CTGCAATGGT AATTCCACTC AAACATGTGA CTGTATGGAG AGTTTTTCTG 
    TGAAGTCACT GTGGGATTGG GAGCTTGATG ATAGAACAGG AGGGTGCATC 
    AGAGATACCC CATTGCATTG TGTAAGTGAC AAAAACATGA CAAGTTCAAC 
    TGACATGTTC CAACCTATAG GTCTTGTTAC ATTGCCCTAT GACCCCCAAA 
    TTATGCAAGA TGCTACAACT CAGGGTGAAT GTGCACAAGC TTGTCTCAGT 
    GATTGCTCTT GCACAGCTTA TTCTTATCAA AATAGTAGAT GCTCTGTCTG 
    GCATGGGAAA TTACTTAATG TAAATAAAAA TGATGGCATT TACATTAATG 
    CGGACAATGT TCTGCACCTT CGTCTTGCTG CCACAGATTT CCAAGATTTG 
    AGTAAAAACA AAAGAAAAAC AAATGTTGAA CTTGTTGTGG GCGCAAGCAT 
    TGTTAGTTTT GTGTTAGCAT TGATCATGAT ACTGCTAATG ATTAGAGGGA 
    ACAAATTCAA GTGTTGTGGT GCACCATTCC ATGACAATGA AGGCCGTGGT 
    GGAATAATAG CCTTTCGATA CACTGATTTA GCTCATGCTA CTAAAAACTT 
    CTCGGAAAAA TTAGGAGCAG GTGGGTTTGG CTCAGTATTC AAAGGAGTGT 
    TAACTAACAT GGCTACCATA GCAGTGAAAA AGCTTGATGG TGCCCATCAA 
    GGTGAGAAGC AATTTAGAGC TGAGGTGAGC TCCATTGGAA TTATCCAACA 
    TATCAACTTA GTCAAATTGA TCGGCTATTG TTGTGAGGGT GATAAGAGAT 
    TGCTGGTATA TGAACACATG TTAAATGGTT CTCTTGATGT TCATCTATTT 
    CAGAGCCATG CAGCTGTCCT AAATTGGATT ACCATGCACC AAATAGCCAT 
    AGGAGTTGCT AGAGGATTGT CTTACTTGCA TGAGAGTTGT CGTGAATGCA 
    TCATACATTG TGACATTAAA CCAGAAAACA TACTTCTCGA TATATCATAT 
    TTTCCAAAAC TTGCAGACTT TGGGATGGCA ACATTTGTAG GAAGAGATTT 
    TAGCCGAGTT CTAACTACTT TTAGAGGAAC TGTAGGGTAT CTTGCACCAG 
    AGTGGATTAG CGGAGTTGCT ATTACTCCAA AAGTTGATGT TTACAGCTTT 
    GGTATGGTGC TATTTGAAAT CATATCGGGA AGGAGGAATT CTCCTGAAGT 
    ACACACTAGT GGTAATTATG ATGCTACTTA TTTCCCTGTG CGAGCGATTA 
    ATAAGCTGCA TGAGGGAGAC ATGAGTAGTT TAGTGGACCC AAGATTACAT 
    GGTGACTACA ATTTGGATGA GGTTGTCAGG GTCTGCAAAG TTGCTTGTTG 
    GTGTATCCAA GATGATGAGT TCGATCGGCC CACAATGCGT GAAGTGGTCC 
    GGGTTCTTGA GGGTCTACAA GAGCTTGATA TGCCCCCAAT GCCAAGGCTA 
    CTTGCGACTT TAACAAACTT CTCTGCTGTG GCTTCAATGT AATTGTGTTT 
    TCTTCTACTT TCTGCAAATT ATAATTCTAC ATGGAAAACA TTGATAAAGA 
    AAACATGGTT ATACTTGCTA AATTATATCT TTTTATTTAA TTGATGGCTG 
    CTTATGGTAA GCAAGTATTG TATC

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 1e-171; Score: 600.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 2.5e-45
    HMMPfam Curculin-like (mannose-binding) lectin 6.7e-31
    HMMPfam S-locus glycoprotein 4.8e-18
    HMMPfam PAN-2 domain 2.7e-16
    HMMSmart Curculin-like (mannose-binding) lectin 9.1e-26
    HMMSmart Apple-like 1.4e-07
    HMMSmart Serine/threonine-protein kinase domain 2e-32
    HMMSmart Tyrosine-protein kinase, catalytic domain 3e-19
    Gene3D no description 2.9e-19
    Gene3D no description 7.3e-50
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther S-RECEPTOR KINASE 4.2e-195
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.2e-195
    superfamily Protein kinase-like domain 1.2e-75
    superfamily Curculin-like (mannose-binding) lectin 9.5e-29
    ProfileScan Protein kinase, catalytic domain 34.972
    ProfileScan Curculin-like (mannose-binding) lectin 16.916
    ProfileScan Apple-like 9.338

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR