K19526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19526

Determination of introduced cDNA(s)

  • J023048I16 - Rice Full-length cDNAs - Original: J023048I16

    full reading [+] show sequence

    Nucleotide sequence: J023048I16 - full reading 
    GACCATTGCA TGCACCACCG GAACGCCTCA CAGCCGTAGT CTTCCTTTCC 
    GGTCCCGTGC ATGCCCAGGA CGCCATGGGC CACAACCGAG AATAGCATCA 
    ACCTTGCCAC CGCTGCTGCT TCGCCGGCGC CAATGCCGAT GTGAGCCCGG 
    CCCGGCCGCC GCACCCCCCT CCCCCTACGG CGACGACGTC ACGCGCGCGC 
    GAGATGCCAT TGTTGCTTCT GTGAGGGGGG CTCACCGGAA CGCGTCGGCA 
    TTGACGACGA CCCGGACGAA CGCGCGGCAG CATGATGCCG CGCGTCCTCA 
    TGGCGTCTAC GGAGGACACG GCCACGGCCC CTGCCGGTGG GCCGCCGGAG 
    CCCCCGCCGC AGTCGTCGTC GGCCTCGCCG TCGCCTTCCC CTCCTCCTCC 
    TCCACCGACA CCGTCCTCGC CTCAGCGGCC TCCCCCGCCG CCGCCGCCGG 
    CCACTCCGCC CCCGCCTCCT CCGGCATCTC CAGGCAAAAA CCAGAGTCCC 
    GCGTCGCCGT CCCAAGATTC ACCTCCGCCA GTGGCGTCCC CGTCAGTATC 
    CTCACCTCCT CCGGCACCGA CGACACCGCC CTCTCCGCCC CCACCAAGCA 
    AGTCCCCTCC ACCGCCGTCT CCGCCTCCTA CTACGTCGTC GACACCGCCA 
    TCGCATCAAT CACCTCCGGA AGAAGGAACC TCGCCGCCAC CTTCGCCATC 
    ATCAGGGGCT ACAACACCTT CACCTCCCCC AAATGCGCAG TCGTCGTCGT 
    CGTCTTCCAC ACCTCCTGCC GGCGCAGGAA CCTCGCCACC TGCACCGCGC 
    GAAATGCCAT CGCCCGGGAC GCCACCATCG CCGCCGACGA CGCTTATTAC 
    GACACAGGCG CCGCCGATCC AGCCACCACC ACCACCGGGC GGTAACAGCA 
    TGATCATGCC GAGCTCCCTA ACTACAGCCG GCACGTCTCA GAGCCCGCCT 
    GACGCCACCA CCGCCGGCGC ACCACCACCT CCGGCTCCAT CGGTGGGAGC 
    ATGGGGCGGC AACGTGCCGA GCGGGTTGCT CATCGGTGTC GCCTTCGCCG 
    GTTTCCTCCT GGCGTTGGCG TCCATGTTCT TGTTCTTGTG CATCAAGAAC 
    CGGTGGAAGA GGAGGCGGCG GCCGGCACAG GTGATGAACC TGGCGCGCAG 
    GAGAACCCTC GTCGTGCCGG AGCGTGTGGC GTCGCCGGAA GTGTACCAGC 
    CGTCGAACGG TCCGACGGCG TCGCCGAGCG GGACGAGCTC GTACGAGTTC 
    TCCGGGACGA CGTCGTGGTT CACGTACGAT GAGCTGGCGG CGGTGACCGG 
    CGGGTTCGCG GAGGAGAAAG TGATCGGCGA GGGCGGGTTC GGGAAGGTGT 
    ACATGGGGGC GCTGGGCGAC GGGCGGTGCG TGGCGGTGAA GCAGCTCAAG 
    GTGGGGAGCG GGCAGGGGGA GAAGGAGTTC CGCGCCGAGG TGGACACCAT 
    CAGCCGCGTC CACCACCGCC ACCTCGTCAC CCTCGTCGGC TACTCCGTCA 
    CCGAGCACCA CCACCTCCTC GTCTACGAGT TCGTCTCCAA CAAGACGCTC 
    GACCATCACC TGCACGGAGG AGGCCTCCCC GTCATGGATT GGCCCAAGCG 
    GATGAAGATT GCCATCGGAT CAGCCCGTGG TTTGACCTAC CTGCACGAAG 
    ACTGCCATCC TAGGATCATA CATAGGGACA TCAAGTCGGC CAACATCCTC 
    CTGGATGACG CCTTCGAAGC AAAGGTCGCG GATTTCGGTC TTGCCAAATT 
    CACCAACGAT TCGGTGACTC ATGTCTCGAC GCGCGTGATG GGCACATTCG 
    GGTACCTGGC GCCGGAGTAC GCATCAAGCG GGAAGCTGAC GGACAGATCG 
    GACGTGTTTT CGTTCGGGGT GGTGCTGTTG GAGCTCATCA CCGGGCGGAA 
    GCCCGTGGAC TCGTCTCAGC CCCTCGGAGA AGAGAGCTTA GTTGAATGGG 
    CTCGGCCTCT CCTGGTGGAC GCGTTGGAGA CGGACGACTT CAGGGAGCTC 
    GCTGACCCCG CGCTGGAGCG CCGCTACTCC AAGTCGGAGA TGCGGAGGAT 
    GGTGGAGGCC GCGGCCGCTT GCATTCGCTA CTCCGTCACC AAGAGACCAA 
    GGATGGTGCA GGTGTGGCGA TCGCTGGACG TGGAGGGGAG CTCGCCGGAC 
    CTGACCAACG GAGTGAAGCT TGGGCAGAGC ATGGCGTACG ACTCCAACCA 
    GTACTCGGCG GACATCGAGC TCTTCCGGCG GATGGCGTTT GCCAACGACC 
    TCTCCACCGC TGAGCTCGGC TACTCCGGCA AGGACGACGT ACGCCGTCCG 
    CCACGCTAGC AGCAGCTCCA GGACCAGGCC CAGCTGAGCA CTAACGGCAC 
    ATGCGCTGTT GTTAAATTTG TTGTCGTAAC TAACACGCAT GCATGTATGT 
    AAGACGGGGT GGCAGAATTG GTGTATATAT AAAAAGGCTT TGAATAGCAA 
    TCCTGTTGAT TTGGGG

    Gene models with high sequence identity

    1. AT1G23540.1 [+] show detail - Protein kinase superfamily protein
      E-value: 1e-138; Score: 491.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 9e-81
    Gene3D no description 8.7e-22
    Gene3D no description 4.3e-51
    ProfileScan Protein kinase, catalytic domain 36.965
    HMMSmart Serine/threonine-protein kinase domain 9.8e-34
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.2e-26
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.3e-173
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    FPrintScan PRICHEXTENSN 3.8e-09
    FPrintScan PRICHEXTENSN 3.8e-09
    FPrintScan PRICHEXTENSN 3.8e-09
    FPrintScan PRICHEXTENSN 3.8e-09
    HMMPfam Serine/threonine-protein kinase-like domain 1.7e-43

    See the detailed result >

    AT1G23540.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.
    Computational Description
    INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR