K19603

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19603

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19603

Determination of introduced cDNA(s)

  • J033066M05 - Rice Full-length cDNAs - Original: J033066M05

    full reading [+] show sequence

    Nucleotide sequence: J033066M05 - full reading 
    GGTCCGTCCG TTCGATTCGA CGACACCTTC ATTTTTATTT TCTTCCTTGT 
    GTAATAAGAA GACGACTAGT GGTAACAAAA AGATTCGCTC CCTACGCGAC 
    GCCCCGACCC CGATTCCCTT CGCTTCCTAC TCCTTCCTCT TCCTTGTTCC 
    TTCCTTCCTT CCTCACCCCA CGAACGCGCA CACCAACCTT TCCCATCCCT 
    AGCTGCTGCC CTTCCATCGG ATCCACGGAT CGAGACCTGG CACGGCGGCG 
    GAGGACGGGC CGGCGGAGAT GGAGGTGGAC CACGCGGACC GCGACGGCGC 
    GCGGCGCCGG TGCCGCGAGT ACCTGCTCGC GCTCGAGGAG GAGCGCCGCA 
    AGATCCAGGT GTTCCAGCGG GAGCTCCCTC TCTGCTTCGA CCTCGTCACC 
    CAGACTATCG AGGGGATGAG GAGCCAGATG GACGCCGCCG GCAGCGAGGA 
    GACGGTCAGC GACCAGGGCC CGCCGCCGGT GCTCGAGGAG TTCATCCCGC 
    TCAAGCCCAG CCTCTCGCTG TCCTCCTCCG AGGAGGAGAG CACCCACGCC 
    GACGCCGCCA AGTCAGGCAA GAAGGAGGAG GCCGAGACGT CGGAGAGGCA 
    TTCGTCGCCG CCGCCGCCGC CGCCGGAGGC CAAGAAGGTG ACGCCGGATT 
    GGCTCCAGTC CGTGCAGCTC TGGAGCCAAG AAGAACCCCA GCAGCCATCG 
    TCTCCTAGCC CAACTCCTAC CAAGGATTTA CCGTGCAAGC CGGTGGCGCT 
    GAACGCCAGG AAGGCCGGCG GAGCGTTCCA GCCGTTCGAG AAGGAGAAGC 
    GCGCCGAGCT GCCGGCGTCG TCGACCACGG CCGCGGCGAG CTCGACCGTG 
    GTCGGAGACA GCGGCGACAA GCCCACCGAT GATGACACGG AGAAACACAT 
    GGAGACGGAC AAGGACAACG ACAAGGACGC CAAGGACAAG GACAAGGAAG 
    GCCAGTCGCA GCCTCACCGG AAGCCTCGCC GGTGCTGGGC GCCGGAGCTC 
    CACCGCCGCT TCCTGCAAGC GCTGCAGCAG CTGGGCGGGT CCCATGTAGC 
    GACGCCCAAG CAGATCCGGG AGCTGATGAA GGTGGATGGC CTCACCAACG 
    ACGAGGTCAA GAGCCATTTG CAGAAGTATC GTCTACACAC GAGGAGGCCG 
    AGCTCGACGG GGCAGAGCAG CGCCGCAGCC GGCGTCCCCG CCCCGCCTGC 
    GCCGCAGTTC GTCGTCGTCG GGAGCATCTG GGTACCCCCG CCGGAATACG 
    CTGCCGCGGC CGCCGCACAG CAGCACGTGC AGCTTGCCGC CGCCGGCAAT 
    AATGCGTCCG GGAGCGCCAA CCCCGTGTAC GCTCCGGTGG CGATGCTGCC 
    GGCAGGCTTG CAGCCGCATT CGCATCGGAA GCAGCACCAG CAGCAGCAGC 
    AAGGACAGAG ACATTCCGGG TCGGAAGGCC GGCGGAGCGG GGACGCCGGC 
    GATGGCAGCT CGTCCTCCCC GGCCGTCTCG TCGTCGTCGC AGACCACCTC 
    CGCTTGATTA GTGTAGATTC GTCGATTACA TCATTATATG TACGTAGTAC 
    GAGAGTGCAT CACATCAAAG TGCAGCTTGA TTTTGGAGCT AGCTAGCTTA 
    AATTAAGGGT TAATTACTGA TTGCTTCGTG ATCGCACACA CCACATTTGC 
    TGTTTTGTTT GTAAAAAAGA TAATAAAATA CATAAATATT AAGG

    Gene models with high sequence identity

    1. AT1G25550.1 [+] show detail - myb-like transcription factor family protein
      E-value: 5e-48; Score: 189.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 12.508
    Gene3D Homeodomain-related 4.6e-20
    Coil coiled-coil 0
    superfamily Homeodomain-like 3.3e-17
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 4.4e-36
    HMMPfam Myb, DNA-binding 2.8e-10

    See the detailed result >

    AT1G25550.1

    Model type
    Protein coding
    Short Description
    myb-like transcription factor family protein
    Computational Description
    myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT1G68670.1); Has 1641 Blast hits to 1637 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1615; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR