K19644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19644

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19644

Determination of introduced cDNA(s)

  • J023088J12 - Rice Full-length cDNAs - Original: J023088J12

    full reading [+] show sequence

    Nucleotide sequence: J023088J12 - full reading 
    GATCGTGTAC TCGTCGTAGC CACCACACCG CCCACACACC CACACCGCCG 
    GTAGCGAGGC AGCTCACATG GCGGCGACGG CGACGGCGAC GGCGGCGCCG 
    GAGGAGGAGG AGGGGAAGAG GGTGATGACG AGGGCGCTGG AGTGGGAAGG 
    GTGCGTGGTG TCGCCGGTGC CGACGGCGAC GGCCGACGAG GCGTGGGCTC 
    TGCTGTCGGA CTTCCTCGCC TTCCACCGCT GGCACCCGCG CGTCGCCAAG 
    TGCCGCCCCG CCTCGCCGTC GGCCGCGGCG AGCACGGCCG CCGCCCCGCC 
    GGGCTCCGTC GTGCGGTACT GCGAGGGCAC GCCGCGCGGC GACGGGGCGC 
    CGCCGGACTG GGCGCACGAG ACGCTGCTCG AGCACGACGC CGCGCGCCGC 
    TTCTTCCGCT ACGAGATGAA CGACAACAAC ATGGGCTTCG GCGTCTTCGT 
    CGCCACGTTC CGCGTCGTCC CCGACGCTGG CGGCGGCGAC GCGGACGCGC 
    CGGGGTGCGA GCTCCGGTGG GAGTTCGAGG GCGACCCCGT GCGCGGCACG 
    CCCAAGGAGG CCCTCGTCGC GCGCCTGCAG GCCGGCCTCG ACGGCATGGC 
    GGCGCGCGTG CAGGAGCACC TCATGTCCGC CCGCGCCGCC GACGCCGCCG 
    TCATCGCCGC CGGCGGCGTC GAGGCCGCCG ACGAGCTCAA CCGGGACAAA 
    TACTCTATCG CGGTCTGAGT GTTCGTCCGG TCCGTCGATC GATCGGTACA 
    GTACACCAGT ATATGCGCGG TTGCTGGTCA ACTTTATACG TGAACTAATT 
    TGGCTGCAAA AACGTATATT GTTCGATGAA AATACACGAA CTCTGTCGCC 
    GTCTTCCGTA TATATGTACG TACCTACGTA TACCTACCTA CGTATACGGT 
    ATACTGTGTT TGTACGTGCT TGGGGTATGG GAATAAACGT TACTAAGTAC 
    TG

    Gene models with high sequence identity

    1. AT2G25770.2 [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
      E-value: 2e-14; Score: 76.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Bet v1-like 2e-06
    HMMPfam Polyketide cyclase/dehydrase 2.2e-29

    See the detailed result >

    AT2G25770.2

    Model type
    Protein coding
    Short Description
    Polyketide cyclase/dehydrase and lipid transport superfamily protein
    Computational Description
    Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G32870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR