K19830

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19830

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19830

Determination of introduced cDNA(s)

  • J033086K14 - Rice Full-length cDNAs - Original: J033086K14

    full reading [+] show sequence

    Nucleotide sequence: J033086K14 - full reading 
    GGGTGGAGCA GGAGCTATAA AAAGAAGCAG GAAGCCACTC GCTCTCCTCA 
    CAGCCACAGC TCGCCATCGT CGTCGTCGTC GTCGTCGTCT CCGGCTCCGG 
    CAAGAGAGCT AGTAGTGAGT AGTAGAAAGA AGAAGAGGCA AATTAATAGT 
    AATGGAGGGG AAGGAGGAGG ATGTGAGGCT GGGGGCGAAC AGGTACACGG 
    AGAGGCAGCC GATCGGGACG GCGGCGCAGG GGGCGGAGGA GAAGGACTAC 
    CGGGAGCCGC CGGCGGCGCC GGTGTTCGAG GTGGAGGAGC TGACGTCGTG 
    GTCGTTCTAC CGGGCGGGGA TCGCGGAGTT CGTGGCGACG TTCCTGTTCC 
    TGTACATCAG CATCCTGACG GTGATGGGGG TGAACAAGTC GGCGTCCAAG 
    TGCGCCACCG TGGGGATCCA GGGCATCGCG TGGTCGTTCG GCGGCATGAT 
    CTTCGCGCTC GTCTACTGCA CCGCCGGCAT CTCCGGCGGG CACATCAACC 
    CGGCGGTGAC GTTCGGGCTG TTCCTGGCGC GGAAGCTGTC GCTGACGCGG 
    GCGGTGTTCT ACATGGCGAT GCAGTGCCTG GGCGCCATCT GCGGCGCCGG 
    CGTGGTGAAG GGGTTCCAGC GGGGGTTGTA CATGGGCTCC GGCGGCGGCG 
    CCAACGCCGT GAACCCGGGG TACACCAAGG GGGACGGGCT CGGGGCGGAG 
    ATCGTGGGCA CCTTCGTCCT CGTCTACACC GTCTTCTCCG CCACCGACGC 
    CAAGCGCAAC GCCAGGGACT CCCACGTCCC CATCCTGGCG CCGCTCCCCA 
    TCGGCTTCGC CGTCTTCCTC GTCCACCTCG CCACCATCCC CATCACCGGC 
    ACCGGCATCA ACCCCGCCCG CAGCCTCGGC GCCGCCATCG TCTATAACCG 
    CGCCCACGCA TGGCACGACC ACTGGATTTT CTGGGTTGGT CCGTTCATCG 
    GAGCGGCACT GGCGGCCATC TACCACGTGG TGGTGATCAG AGCAATCCCC 
    TTCAAGAGCC GGGACTAATT AATTACCATG CACCATCATC TTAATTAAGC 
    GATAATTACT CTGAAATAAT CAACCGAGTT GATGCTGCAA GATGATGGAG 
    GATCAAGTCT CTACAGTACT ACGTGTGTTA TTACCGTCTG GTGATCGATG 
    AAGCTAGCCG CTGCATAATT ATAAGCGCGT TTATATATAT CTGATGTTGC 
    TGTAATTATA TCTATGTGTA CGTAGTATGT TTGGTGTGAG AAATGGTACT 
    TGTGTGTGCG GAGGCATGCA TGTTCTTGGT TGCACGCCTT CAGCTATATA 
    TAGCTTTGCA TCAATTCC

    Gene models with high sequence identity

    1. AT4G23400.1 [+] show detail - plasma membrane intrinsic protein 1;5
      E-value: 5e-135; Score: 478.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AQUAPORIN-RELATED 1.5e-194
    HMMPanther Major intrinsic protein 1.5e-194
    HMMTigr Aquaporin 5e-96
    PatternScan Major intrinsic protein, conserved site 0
    HMMPfam Major intrinsic protein 8.3e-85
    Gene3D Major intrinsic protein 1.8e-63
    superfamily Major intrinsic protein 1.7e-61
    FPrintScan Major intrinsic protein 2.8e-69
    FPrintScan Major intrinsic protein 2.8e-69
    FPrintScan Major intrinsic protein 2.8e-69
    FPrintScan Major intrinsic protein 2.8e-69
    FPrintScan Major intrinsic protein 2.8e-69
    FPrintScan Major intrinsic protein 2.8e-69

    See the detailed result >

    AT4G23400.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1;5
    Computational Description
    plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR