K19907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19907

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19907

Determination of introduced cDNA(s)

  • J013068M11 - Rice Full-length cDNAs - Original: J013068M11

    full reading [+] show sequence

    Nucleotide sequence: J013068M11 - full reading 
    GAGTCCGGTA TTTCCCCCAA TATGTGTCAG CCAAGAAAGC TCCAAAGAGT 
    GGCGTGAGGT AGCAGGCGCC CGACCAAGCA GAGGAATTCC TCGCGGCGTT 
    CACTTTGCTC TCGTGGAGAA TCTTGGTGAG GTAGGTCACC AGGTTCTTGG 
    AGATCCCATA GTAAGCCAAA TTCTCACTGA ATTCGACACC TGGTTAGGTT 
    GAGTGATTAA CTTTAGTTTG CAATTTTAGT TCAAAAGGTT GTGAGAAACA 
    GATATATGGA AGATCAGCGA TTTGAATTGA ATTGCTGTTG CTAATTATTC 
    TTGGTACCTA GGATCATGAA GCATGCTCTC CAATTCCCCG TGCTGCGCTT 
    GAGAGCAGGC TGGTTGTTGA CGTCCACCGA TCCATCACCT GTATACTCTG 
    AATCTGCATC CCCCTGCAGA AAAATCATCC AAACTATGAG CTGCAGAAGC 
    TGAAACTTGA AGCAAAGAAT CTTGGTGGAT TGTTCGACTT TGTTCCAATG 
    ATATGCATGC AGAAGTCAAG AAGCAATGGT AGGTAGGTTA GATACCCGTG 
    AAGGTTGAGG TTGAGGTTGA AGCAGAGGCG CCCTCTCCTC ATCTGCTGCT 
    TCCATGGCCA TCTACCTGAT GAGAACTATA CCTTGAGAAT TCAGAGTGAG 
    CAGAGAGGAT GGAGTAGGTT GATGGTGAAG AATTAGCTGT ACGGAGCAGC 
    TCGATTCCAT GGCAGCATAG CTACTAGTAG TAGTAGCTGA GCAGGAGGGA 
    GGCAGGGAGA GATGGAGAGG GGAGGATAAG AAATTTTGTG TGCACGGGAA 
    GGATTGAGGC GTCAGACTGA CGTGCACAAC ACAGTGATCA TGTATTGTTG 
    ACCTGTATTA TTTTGTTTTC GTTTCTGCAT GTGCAATGAT CTGTTCGTCC 
    TATTGCAGTT AAGTCCCTGT CGCCTCCCTG TGGGTTGGAC CTACAAAAAT 
    AAATAATAAT TTAGATCTGG C

    Gene models with high sequence identity

    1. AT2G02040.1 [+] show detail - peptide transporter 2
      E-value: 1e-24; Score: 45.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 7.8e-11
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 7.8e-11
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.8e-33
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.8e-33

    See the detailed result >

    AT2G02040.1

    Model type
    Protein coding
    Short Description
    peptide transporter 2
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
    Computational Description
    peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR