K19947

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19947

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19947

Determination of introduced cDNA(s)

  • J033068A16 - Rice Full-length cDNAs - Original: J033068A16

    full reading [+] show sequence

    Nucleotide sequence: J033068A16 - full reading 
    GTGACTCTCC TCTTTATAAC CCGTCTCCCT TCTCATCTTT TTCTCCACAG 
    TCGCCTCCTC CCCTGCCAAA CCAGTCTCCC CCAAATCTCC TTTGCGTCCT 
    CTCGATTCCT CAGCGACCAT GTCGGCCTAC TGCGGCAAGT ACAAGGACGA 
    GCTCATCAAG AATGCTGCCT ACATTGGCAC TCCTGGCAAG GGTATCCTTG 
    CTGCAGATGA GTCCACTGGC ACCATTGGCA AGCGCTTTGC CAGCATCAAT 
    GTCGAGAACG TTGAGGAGAA CCGCCGCTCT CTCCGCGAGC TGCTCTTCAC 
    CACCCCTGGT GCCCTCCAGC ACCTAAGTGG TGTGATCCTC TTCGAGGAGA 
    CCCTGTACCA GAAGACCAAG GACGGCAAGC CCTTCGTCGA TGTCCTCAAG 
    GAGGGTGGTG TCCTCCCTGG CATCAAGGTT GACAAGGGTA CCGTTGAGGT 
    TGCCGGCACC AACAAAGAGA CCACCACCCA GGGCCACGAT GATCTTGGCA 
    AGCGTTGCGC CAAGTACTAC GAGGCCGGTG CCCGCTTCGC CAAGTGGCGT 
    GCTGTCCTCA AGATTGGCCC CAACGAGCCA TCGCAGCTTT CCATTGACCT 
    GAATGCTCAG GGTCTTGCTC GCTATGCCAT CATCTGCCAG GAGAACGGGC 
    TGGTGCCGAT TGTCGAGCCT GAGATCCTTG TCGATGGCTC TCATGACATT 
    GAGCGCTGTG CCTATGTCAC CGAGAAGGTC CTCGCTGCCT GCTACAAGGC 
    CCTCAACGAA CACCATGTCC TCCTGGAGGG TTCCCTCCTG AAGCCCAACA 
    TGGTCACCCC AGGATCTGAA TCCAAGAAGG TTTCCCCTCA GCTCATCGCC 
    GAGTACACCG TCCGCGCCCC TCCAGAGGAC TGTCCCTGCT GCCGTGCCTG 
    CCATTGTCTT CCTCTCTGGT GGACAGAGCG AGGAGGAGGC GACCGTGAAC 
    CTCAACGCCA TGAACAAGCT CAGCACCAAG AAGCCGTGGG CTCTGTCCTT 
    CTCCTTCGGC CGTGCTCTCC AGCAGAGCAC GCTCAAGGCC TGGGGCGGCA 
    AGACGGAGAA CGTGGTGAAG GCGCAGAAGG CCTTCATCAC CAGGTGCAAG 
    GCCAACTCTG AGGCTACCCT TGGTACATAC CAGGGTGATG CTGTGCTCGG 
    CGAGGGTGCC TCTGAGAGCC TTCACGTCAA GGACTACAAG TACTGATCTG 
    CTTCTGGTGG TGGCTGAAGA TCCGATTGGA CATCCTCCGT ATGCATATTT 
    AGGGTTCTGA GTGTGGTTTG GCTATCAAGC GTCCAATCTT ACGGGTATCA 
    AAAACTTTTG TCGCAATAAT CTGAACCTGT GCTTTTTAAT AATTAATACC 
    TGTCATCGGT AGTAGTTTTT TGGTATTCCT GTAATCAAAT GCTGCGTATG 
    GTAAATTGGA GCAGCGGCTT TAATTCCATG CTATCTTTTT ATTGTTATTT 
    TCTGCTGTAC TCCTATGTTA ATTAAACCTT TTACCT

    Gene models with high sequence identity

    1. AT2G36460.1 [+] show detail - Aldolase superfamily protein
      E-value: 1e-166; Score: 189.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Aldolase-type TIM barrel 6.7e-100
    Gene3D Aldolase-type TIM barrel 7.9e-36
    HMMPfam Fructose-bisphosphate aldolase, class-I 3.1e-122
    HMMPfam Fructose-bisphosphate aldolase, class-I 2.8e-44
    PatternScan Fructose-bisphosphate aldolase, class-I 0
    HMMPanther Fructose-bisphosphate aldolase, class-I 1.4e-192
    HMMPanther Fructose-bisphosphate aldolase, class-I 1.6e-72
    superfamily Aldolase 1.2e-111
    superfamily Aldolase 1.4e-42
    Coil coiled-coil 0

    See the detailed result >

    AT2G36460.1

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, pentose-phosphate shunt; LOCATED IN: mitochondrion, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT3G52930.1); Has 5036 Blast hits to 5030 proteins in 977 species: Archae - 0; Bacteria - 714; Metazoa - 1434; Fungi - 8; Plants - 477; Viruses - 0; Other Eukaryotes - 2403 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR