K20105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20105

Determination of introduced cDNA(s)

  • J023023O07 - Rice Full-length cDNAs - Original: J023023O07

    full reading [+] show sequence

    Nucleotide sequence: J023023O07 - full reading
    GGGTACTAGT GTATTTCACG ATAAATACAA CGGCGGCCCA CCACCACCTC 
    GCTCCGTAGT GTCCGCACAG CGAACGCCTC TCGCGCGCGT GCTTACTGGT
    GACTGGTCCA AGCAGCAACG CAAGCAATGG CGTCGCACGC GAACGCCTAC
    GGCATCGCCT TCAGCGGTGG GTTTGGCACA TACTTGTTTG GTATGAGTGA
    AACAATTGCT AAGCAAGCAA CAGAGGCTAA TAATGCTCAG AATGTCAAGA
    ACCCTCACAT CGGGTGGATG ATTGGATTCC TCTTCCTCGT CAGTTTTATT
    GGGCTACTTG CTCTTGTGCC TCTGAGAAAA ATTATGATTG TCGACTACAA
    ACTGACCTAT CCAAGTGGCA CGGCAACAGC TTATCTTATC AATGGCTTCC
    ACACCCCAGA GGGTGCAAAG CTTGCTAAGA AGCAAGTAAA GGAACTGGGG
    AAACTCTTTT TGTTCAGCTT CGTTTGGGGC TTCTTTCAGT GGTTCTATAC
    TGCCGGAGAT GGTTGTGGAT TCCAGAGCTT CCCTACATTA GGCCTTCAAG
    CCTATAAAAA CAGGTTTTAC TTTGATTTCT CCCCTACCTA TGTTGGAGTA
    GGGATGATTT GCCCCCACAT TGTGAACGTA TCTGTTCTAT TGGGAGGCAT
    CCTCTCATGG GGAATCATGT GGCCCCTGAT AAGAAACAAG AAAGGGAGTT
    GGTATGCTGC CTCTCTCTCA GAAACTAGTC TTCATGGACT GCAAGGCTAC
    AGGGTGTTCA TATCCATTGC CTTGATTCTT GGAGACGGCC TGTACAACTT
    CGTGAAGGTG CTCATCCGCA CAACCGCTGG CTTCGTCGTG ATGATGAAGA
    AGAACAGCAC GCTTCCGGTC TCCAACAATG GCAGCCCGAT GGTGGCCACT
    GAAGCCATCT CCTTCGACGA CGAGCGCCGC ACCGAGCTCT TCCTCAAGGA
    CCAGATCCCC AAGACGGTCG CGTTCGGGGG GTACGTCGCC GTCGCCGCCG
    TATCGATCGG CACGCTCCCG CAGATCTTCC CGCAGCTCAA GTGGTACTAC
    ATCCTGGTCG CCTACGTCTT CGCGCCCGTG CTGGCCTTCT GCAACGCCTA
    CGGCGCCGGG CTGACGGACT GGTCGCTCGC GTCCACGTAC GGCAAGCTCG
    CCATCTTCAT CTTCGGCGCG TGGGCCGGCG CGTCGAACGG CGGCGTGCTG
    GTCGGGCTCG CCGCCTGCGG GGTGATGATG AGCATCGTGT CGACGGCGTC
    CGACCTGATG CAGGACTTCA AGACGGGGTA CCTGACGCTG GCGTCGCCGA
    GGTCCATGTT CGTCAGCCAG GTGATCGGCA CGGCGATGGG GTGCGTCATC
    GCGCCGTGCG TCTTCTGGCT CTTCTACAAG GCCTTCGCCG ACATCGGCGT
    GAGCGGCACC GAGTACCCGG CGCCGTACGC CATCGTGTAC CGGAACATGG
    CCATCCTCGG CGTCGACGGC TTCTCCTCGC TGCCCAAGCA CTGCCTCACG
    CTGTGCTACA TCTTCTTCGC CGCGGCGATC GCCATCAACC TGGCAAGGGA
    CCTGGCGCCA AGCAAGGTGG CGAGGTTCAT CCCGCTGCCC ATGGCGATGG
    CGATCCCGTT CTACATCGGC TCCTACTTCG CCATCGACAT GTTCATCGGC
    ACCGTCATCC TCTTCGTGTG GGAGATGGTG AACAAGGCCA AGGCGGAAGC
    GTTCGCGCCG GCGGTCGCCT CCGGCTTGAT CTGCGGCGAC GGCATCTGGA
    CATTGCCGCA GTCCATCCTT GCCCTCGCCA AGGTGAAGCC GCCGATCTGC
    ATGAAGTTTC TGTCGCGATC GGTGAATGCG CAAGTGGATG GTTTCCTGGG
    TAACTAGATG TGATCAGCCT GAAATCATCG CCAATGTGAA CAACCACTCT
    GTATCATCTG TGTCATCATC CTGCAATCTC GGTTTCAAAA AAAAAAAATC
    ATCCTGCAAT CAGGATATCG TATGTTCTGT TAGGGATTGT ACTATAATCT
    GTCTCTGAAC ACCTGTATAT GTTAGTGGAG TGTGACAATC ATCCTTGAAT
    CCTTGATTCC AAATTTCCAG TGTTGTAATT GTATATATAT TCCTGCAATC
    ATCAGTAAGT GGCGTTCTAC TGTCTCC

    Gene models with high sequence identity

    1. AT1G65730.1 [+] show detail - YELLOW STRIPE like 7
      E-value: 0; Score: 806.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PROKAR_LIPOPROTEIN 6
    HMMTigr Oligopeptide transporter OPT superfamily 3.4e-56
    HMMPfam Oligopeptide transporter OPT superfamily 1.1e-119

    See the detailed result >

    AT1G65730.1

    Model type
    Protein coding
    Short Description
    YELLOW STRIPE like 7
    Curator Summary
    Arabidopsis thaliana metal-nicotianamine transporter YSL4
    Computational Description
    YELLOW STRIPE like 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1836 Blast hits to 1794 proteins in 556 species: Archae - 19; Bacteria - 893; Metazoa - 0; Fungi - 266; Plants - 510; Viruses - 1; Other Eukaryotes - 147 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR