K20122

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20122

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20122

Determination of introduced cDNA(s)

J033080P19 - Rice Full-length cDNAs - Original: J033080P19

full reading [+] show sequence

GTCGTGAAGC TGATGGAGGA GCAGCTGGAT TCATCGGAGA TGGACATGGA 
CGAGCCCGGC GCCGCCGCCC AAGACCGCCA AGGCTTGCGC CGCCGCCAAG 
AAGCCGAGAT CGGTGAGCTC CGACTTCGGC GAGGAGCTGG ACCTGGAGCA 
GCTCGGTGCC AAGCAGCAGC AGCAGCAGCA GGAGAGGAAG CTGTCGAGGC 
AGGACCGCGT CGAGCTGAGC CGCTCGTTCC AGCACGCGGT GAGCTCCCAC 
GACTGGGATG GCGCGGAGGC GCTGGTGCGG AGGGCCGACG CGCAGGGGCT 
CAACGACGTG CTCTGCGTCG CCGTCGACGC CATCTGGTTC CTCAGCGACA 
AGGAGGAGCT CGCCGCCGTC GTGGCCCTGA TCCGGAGGAT CGTGTCGGAG 
GGCGCCAACG ACTTCACCCG CGCCGCGCTC CGGACGTCGT TCCTCGCGTC 
GTGCGTGTCG GCGTGCAGGG GGAGAACGAC CAGCCTCGCC GACGCTGTGA 
GCTTCATGGG GCAAAAGTTG AACGAGCGCC TTCAAGAATC CCATGGCGAC 
GAGGTATTGA AGGCAGAAGC AAGCGCAAAG GTGCACAAGT TCACAGAGTG 
GGCTCTAAAG TGTATCGGGC TGCATTCGCG TGTGCGGGAG AACAAGGGCA 
GAGGAAACCA TGGCACGATC ATTGAGGTCC AACTTCAGCT GTCTGCTTTC 
AAGACATTTC TGGATCTTGC CGATAATGAT CTTACTGGGA AGGATTTCAC 
GGAGGCCTTT GACGCGGCAT GTTTTCCTCT TACACTCTTC TCAAACACCT 
TTGACCAAGG TTGGGCATCA GGTATCTCGG CAGCTGCAAT ACAAGGACTC 
TTAGAGTTGT TAGTAGAGGG TGGTGCCGAT AATGTGAACC AGTGCTTTCT 
TGAGGCTGCT CGCTATGGAA GCACTGAACT CGTGCGCATC TTACTTCAGA 
TTGCTCGAAG GAATAGCTTG GACATCGATG TGGATCTAGC CCTTGGCTTT 
GCTGCTCACT ATGGGAAACT GGATACCATG GGGTGCTTAG TTGAGGAGGG 
TAATGCGGTT GCCTTTCTTG GCCCTTTAAT GCGGGCAGCT GAACGGGGAT 
GCCTTCAAGT TGTTGAATGG TTCGTCAACC TTGGTTGTCG GGATATGGAG 
CTTTGCTTAG CCCTTACTGC TGCAACCTCT AGTAGCCAGG TTGCAGTTGC 
AGCCTATCTT CTCCCTCTAG TCCCAAAGCA TGTTCTTGCA CCCCTCAGCG 
TCGAAATTCT CAAGGCTGCT GGTGAGAGGA GCACCGGTTC CCTGCATGGT 
GTGGACTTCC TTCTCCGCTC AAACTTCCTC AATGACCCAG CTGCCACATA 
TGCTGTAGCA GACAACATTG CAAAATCTGC CGATGAGGCA GTGGATGCAA 
AGCTTAGATC TTTCATGCTC GAGCATTGGT CAGAGGCAGC TTTTTCTGAG 
GGATTCGCGT CTGCGCAAGA GCACTTCGTT AACTTCATGA GGATAATGGA 
AAAGGGTGAG TCGCCGATCT GCCTGAGGGA CCTCCCACTT GAGCTGGTGA 
TTGCCATGGC CTACCTACCA CTGTACAGGG AGTGCGTGGA GTCAGGTGGG 
CGGCTATTGC CGCAGAAGCT GAGAGGGCAG CTTGTTGAGG CGGCTGGTAG 
ACTCGAGGGC CGGCAACTCG ACAGGGCTAG CCAAGGCACA GAGCTCCTGG 
CCATCTTGGA GCACCACCTC CCGTGTTTCA TGATCCAGAC TTGAAAGGTC 
AGCTTCCACA TGATCTGCAT TGGTCGCTGC AAGAAGCAAA GTAACAAGGG 
CAATGCACCA TCTTCAGTGT TTTCCAGTGC TGTCATGTTC CTGCTTGGGG 
ACAATCATCT GAAACGATGG CACCTTGAGG TCTCTGAGAG CATAGTGACT 
GAAGAACTCT CCTGCTGGCG CTGTTCGGAG AGTATATAAT TTTGGGGAGA 
AAATGGTGTG TACCTTCTTG TCGAGCCAAG TGTTGAGTAG ATCTTATTGG 
GATCATAATC TTGATGAAAA TGATATAAGC ATTGAGCAAA GTGTTCTCCA 
GTTTTTTCTG AGTGCTAGCC ATGGGCGTCA TGTTTTTGTT TTGGACTAAT 
GAGTTTTTGA ACATGGACTA GTCTCATC

Gene models with high sequence identity

AT2G44090.2 [+] show detail - Ankyrin repeat family protein
E-value: 0; Score: 670.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Ankyrin repeat-containing domain	5.9e-12
Gene3D	Ankyrin repeat-containing domain	3.99999861686544e-07
HMMSmart	Ankyrin repeat	179.999951654677
HMMSmart	Ankyrin repeat	280.000043118234

See the detailed result >

AT2G44090.2

Model type: Protein coding
Short Description: Ankyrin repeat family protein
Computational Description: Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G59910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR