K20140

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20140

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20140

Determination of introduced cDNA(s)

J033115I22 - Rice Full-length cDNAs - Original: J033115I22

full reading [+] show sequence

GAGCCGACGA TTCCCTCCCC TCCACCGACT CCTCCGCCGT CTCCTCCACG 
CCGCCACCCT CGCCCCCTGC GCTTCCGCCG CCGCGCGGTG GGCCACCCCG 
CCCTCCATCG CCGGCGGGCC ACCCCGCGCT TCGTTGGTTC GGGCCGCGCC 
ACGACGCTGC CTCGGCTCCC TTCTCCCTCC AGGCTGCACG ACTTGAAATT 
CTGTGTATGA AGTAGCATTT ACTGGAGAAA GCTCAAGGGA AACTATCATG 
GATGCCAACT CCAGTTTAAA TGAGCAAAAG TCTGAAGAAC TCAAGCTTAA 
AGCAAATGAT GCCTTTAAAG CAAACAAGTT CTCCCTGGCT ATAGAGCTCT 
ATAGTCAAGC CATTGAGCTA AACAGTTCAA ATGCAGTTTA CTGGGCAAAC 
CGTGCATTTG CTCATACAAA GTTAGAGGAA TATGGAAGTG CAGTGCAAGA 
TGCTTCAAAA GCAATTGAAA TTGATGCTAG ATACTCAAAA GGTTACTACC 
GACGTGGAGC GGCATATCTT GCCATGGGTA AGTTCAAGGA AGCTCTGAAG 
GATTTTCAAC AGGTGAAAAG AATCAGCCCT AATGATCCAG ATGCTACTAG 
GAAATTGAAA GAGTGTGAGA AAGCTGTCCA GAAAATCCGT TTTGAAGAGG 
CAATTTCTGT AGGGGATGAA GAGAAGCGCT CTGTAGCTGA TTCTATTGAC 
TACCGTATCA TAGAAGTAGA GCCACAATAT ACAGGACCAA GAGTTGATGG 
AGACACAATA ACATTAGATT TTGTCAAGGC TATGTTGGAT GAGTTTGAGA 
AACAGAAATG CATACACAAA AGGTACGCCT ACCAGATTGT GTTACAAACC 
GTGCAGCTAT TGCGTTCTGT ACCTTCGCTT GTTGATGTGA ACGTTCCTGA 
TGGAAGTCAT TTTACGGTTT GTGGTGATGT GCATGGTCAG TATTTTGACT 
TGCTCAATAT ATTTAAGCTC AATGGGCTTC CCTCGGAAGA GAATCCTTAC 
CTCTTCAATG GAGACTTTGT AGACAGAGGA TCTTTTTCTG TTGAAGTCAT 
ACTCACTCTT TTTGCTTTCA AGTGCCTCTA TCCGACAGGT ATGTACCTTG 
CAAGAGGAAA CCATGAGAGC AAGAGCATGA ATAAGATATA TGGTTTTGAG 
GGAGAAGTGA GGTCGAAGTT GGGAGAAGCA TTTATTGAAC TATTTGCGGA 
AGCATTCTGT TGCCTACCCC TTGCTCATGT CATCAACAAC AAGGTCTTTG 
TTGTTCATGG AGGTCTCTTT AGTGTTGATG GTGTTAAGCT TTCAGATATT 
AGAGCCATCG ATCGATTCCG TGAGCCTCCT GAAGAAGGTC TAATGTGTGA 
AGTATTATGG AGTGATCCTC AGCCTCAACT TGGTAGAGGT CCAAGCAAAC 
GCGGTGTTGG TCTTTCGTTT GGTGCAGATG TGACTAAGAA ATTTCTACAA 
GAAAATAATC TGGACCTTGT TGTTCGATCC CATGAAGTGA AAGATGAAGG 
CTATGAAATT GAACATGATG GAAAGCTTAT AACGGTGTTC TCTGCTCCCA 
ATTATTGCGA CCAGATGGGT AACAAGGGTG CATACATTCG GTTCACAGCT 
CCAGAACTAA AACCAAATAT TTCCTCTTTC TCAGCGGTGC CACACCCTGA 
CGTCAAGCCG ATGGCCTACG CGAACAACTT CCTCAGGATG TTCCAGTAAC 
AACATATATC CATATCCGCC TTCTTTCGCC ATATTTTTTT TTTGTGACGA 
GGCTGAAGCC TAAAAAGCTT GCTAGCATAC GATGTTTGTA CAACAGATCT 
GGTGGTGTAA GCAGGAATGC AATTTTTCTA TATACTGCCA TGGCACTCTG 
TT

Gene models with high sequence identity

AT2G42810.1 [+] show detail - protein phosphatase 5.2
E-value: 0; Score: 814.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Metallophosphoesterase	1.3e-38
HMMPfam	Serine/threonine phosphatase, PPP5	2.2e-38
HMMPfam	Tetratricopeptide TPR-1	0.00015
HMMPfam	Tetratricopeptide TPR-1	3.4e-09
HMMPanther	PROTEIN PHOSPHATASE-5	4.3e-204
HMMPanther	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	4.3e-204
Gene3D	Tetratricopeptide-like helical	2.1e-35
Gene3D	no description	4.3e-122
superfamily	Metallo-dependent phosphatases	4.4e-119
superfamily	TPR-like	7.3e-31
ProfileScan	Tetratricopeptide repeat	7.611
ProfileScan	Tetratricopeptide repeat	7.139
ProfileScan	Tetratricopeptide repeat	12.656
ProfileScan	Tetratricopeptide repeat-containing	23.712
HMMPIR	Protein phosphatase 5	0
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
FPrintScan	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	3.7e-69
HMMSmart	Tetratricopeptide repeat	0.016
HMMSmart	Tetratricopeptide repeat	0.0042
HMMSmart	Tetratricopeptide repeat	1.6e-07
HMMSmart	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	2.6e-125

See the detailed result >

AT2G42810.1

Model type: Protein coding
Short Description: protein phosphatase 5.2
Curator Summary: Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes to the cytoplasm in darkness and in the nucleus in light. The gene is alternately spliced. This variant does not contain membrane domains.
Computational Description: PROTEIN PHOSPHATASE 5 (PP5); FUNCTIONS IN: protein binding, phosphoprotein phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: response to cadmium ion, nucleocytoplasmic transport, red or far-red light signaling pathway; LOCATED IN: nuclear envelope, integral to endoplasmic reticulum membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Metallophosphoesterase (InterPro:IPR004843), Tetratricopeptide-like helical (InterPro:IPR011990), Protein phosphatase 5 (InterPro:IPR011236), Serine/threonine phosphatase, PPP5 (InterPro:IPR013235), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 25788 Blast hits to 18302 proteins in 1121 species: Archae - 994; Bacteria - 7255; Metazoa - 6041; Fungi - 2745; Plants - 2732; Viruses - 0; Other Eukaryotes - 6021 (source: NCBI BLink).
Link: InterPro Scan - TAIR