K20223

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20223

Determination of introduced cDNA(s)

  • J033082D18 - Rice Full-length cDNAs - Original: J033082D18

    full reading [+] show sequence

    Nucleotide sequence: J033082D18 - full reading 
    GGTTGGGCGT CGTCTCCCTG CGCCGCCTCC CCTCCCTTCT CTCCCCATTC 
    CGCATCCTCC CTCCTGCGCG CAATCGCTTC CAGGAGCCCC TCCCGCCGCA 
    GCCGCAGATG GATTCCTCCG CCTCCGCCTC CGCCTCCCCC ACGGCGGCGG 
    CGGCGGCTGA CGCGGACCGG TACACGTACA GCCCGAGGCT GCGGTGGCAG 
    CCGGAGGTCG AGGAGTACTT CGCCGCCGCG TACGGCCGCG ACCGCTTCGC 
    CCGCATCTCC GAAGCCCTCG CGCATCCTTC TTGTTACTCT TGTATTCGTG 
    TCAATACTCT GAAGTCTTCC ACTGATGCTG TCATGCATAA ACTGATGAAT 
    TTGGTAGATC AGAACGGACT CTGTGGTGGA ATTAATGGTT TGGAGATTGG 
    TCAGCAGAAT GGTGGAGAGC AAGCACATGA AGGGAATTCT GTGGTGCATA 
    AGTGCCCATA TTCTGGCCTT GACAACGTTT TGTTTGTACA AGGTTCAGGA 
    CCACATGCAC TGCACTACAA TAGCCAACCT GACCAATCTA TTAAGGAAGT 
    GATTGTAAGT CGAAAATGTG CAGAGTCGGT TCTTAGAGGA GCCCAGGTGT 
    ACATCCCAGG AGTTTTAGCT TGCAGCTCAC ATGTTGAAAA GGGTGACAAA 
    GTTGCAGTGT CGGTTGCTAT TGAACAACCT GCTGAGGATG GTGGTTGGAC 
    CGTTGGTATA ACACGAGGAA CTGTTTTACA GGGATTGCAG TCAGATGCAC 
    ATCATGAAGA AAGAAAGGGT TTGTACATTG GTCAAGGGAT CACTGCAATG 
    TCAAGGTCCG GAATATTTCG TGTTCCTCAT GGAGTTGCAG TGGAGATGAC 
    TGAGAGGGTG TACAAGCTCC CATCTTTCAA TGATGTGCTC GAAGGGGAGA 
    TATTTCTTCA GAATCTTCCA AGTGTTGTGG CTGCTCGTGT CCTTGATCCC 
    CAGCCTGGAG AGCGGATTCT GGACATGTGT GCTGCCCCAG GTGGGAAAAC 
    AACAGCAATT GCTATCCTGA TGAAAGACCA AGGAGAAATT ATTGCCCTTG 
    ATAGATCTCA CAATAAGGTG ATGGATATTT TGAAGTTGGC CGCTGAGATG 
    GACCTAAATT GCATAAAAGC TTATAAGCTT GATGCACTCA AATCTGTACG 
    GAAGACCAAT GAAGCAAAAT ATATTGGCGA AGCAGGCAGC CGCACTGATG 
    CAATTGTGAC ACTGGCAGAG GACTCTGAGC CTTGTATTAA TAAAGTCGAT 
    GCTGGGACTA CTAATGCCAG TGAAGACAGT TCTACTACAT CAGTTGTTCA 
    GACTGATAAC AAAAAAACAG ATGATAAAAG ATATGTGAGC AAGGCAGACC 
    TCAGGAAGAA CTTAAGGCGA ATGAGGAATG GACCAGGAAG AAATAACTGC 
    TCAGGTGGTA GAGTTGAAAA TTCTAAAGGA TTTTTGCCCA ATAGCTTTGA 
    TCGTGTCCTC CTTGATGCTC CATGTTCTGC ACTTGGCTTA AGGCCTCGCC 
    TCTTTGCTGG TGAGGAAACG CTGGAATCAC TGAGAAATCA TGCGACGTAC 
    CAGAGAAGAA TGTTTGATCA AGCTGTCAAG CTAGTTCACC CTGGTGGGGT 
    GATTGTTTAT TCCACGTGTA CTATAAATCC AGGAGAAAAT GAAGCTTTGG 
    TCAGATATGC ATTGGATAAG TACAAGTTTT TGTCGCTCGG ATCACAGCAC 
    CCAAAAGTTG GAGGACCTGG TATTGTTGGT TCATTTGAGC GATCAACCAA 
    GAAATATACT GAGGAGTGGT TGACAAAGCA TGAATCACAA CTTGTCCAGA 
    GATTCGATCC ATCATCAACT CTGGATACAA TTGGTTTCTT CATTGCAAAG 
    TTTGATGTTG GGCAGAAAGA CGACTGACGT AAGGGGTTCT CTTGAGCATT 
    CTATTTTGGA TCCTACACTC TGAAACTTGC TGTTCCTGAC TTCAAATATC 
    TCAGCATTAA CACTTGCTGC AGTTAGATCA TTTCAGGGCC CCAATCATTT 
    TTCAGTATGA ATGGGAACCA ATATCCCATA TCTGGTTTCC CAGAAATTTT 
    GTGCTCAACT GTCAATATTA AATTATTCTT TGTCCAAGGG ATTATTGTTT 
    GTTGTAATGA AATGCCAAGG GTGACTGGTT GAAAGTAGAA ACATTTGTAA 
    ACCCAAAATG ATAGGGACTT GAGATTTTAG ATGTTGGGTG GTGGGGATAT 
    GGAGCTGGAA GAGTGGAGTT GTGCTTTGTA TGGCTTAGCA TATTTAACTA 
    AATCAATTTC TTTTCTATCA CATGGCAGTA TAGCATACTT TCTCCG

    Gene models with high sequence identity

    1. AT1G06560.1 [+] show detail - NOL1/NOP2/sun family protein
      E-value: 0; Score: 646.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site 0
    HMMPanther NOL1/NOP2/SUN DOMAIN FAMILY, MEMBER 6 1.5e-123
    HMMPanther NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN 1.5e-123
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.8e-49
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 5.3e-11
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 13.249
    Gene3D no description 5.4e-05
    Gene3D no description 2.8e-42
    HMMPfam Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 1.5e-19
    HMMPfam Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 9.5e-11
    HMMPfam Pseudouridine synthase/archaeosine transglycosylase 5.2e-05

    See the detailed result >

    AT1G06560.1

    Model type
    Protein coding
    Short Description
    NOL1/NOP2/sun family protein
    Computational Description
    NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR