K20238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20238

Determination of introduced cDNA(s)

  • J013100H24 - Rice Full-length cDNAs - Original: J013100H24

    full reading [+] show sequence

    Nucleotide sequence: J013100H24 - full reading 
    GTGGGGGTGG GGTGAGGCAC GTGCGGCGGT CGCATTCCGG GAAGACCATT 
    AAGGTGAAGA AAGATGGTGC TGGTGGCAAA GGTACCTGGG GAAAACTTAT 
    AGATACAGAC ACAGATGCAT GCCTTGACCG CAATGACCCA AACTATGACA 
    GTGATGAGGA ACCATATGAA CTAGTTGAAG CCCCTGTTTC AACCCCAGTA 
    GAGGACTACA AGAAATCTGT TGCCCCAATT ATTGAGGAAT ATTTCAGCAC 
    TGGTGATGTT AAATTGGCTG CTTCTGATCT GAAAGAGTTG GGTTATGATG 
    ATTTCCACCG TTACTTTGTC AAGAAGCTTG TTTCCATGGC AATGGATAGG 
    CATGACAAGG AGAAAGAGAT GGCGTCAGTG CTTTTATCAT CTCTTTATGG 
    TGATGTGATC AGTTCTACCC AAATCAGACT AGGCTTTGTG ATGCTGCTAG 
    AGGCTGTTGA TGACTTGGCT GTTGACATAC TTGACGCGGT TGATGTTCTT 
    GCTCTTTTCA TTGCACGAGC TGTTGTTGAT GACATTCTGC CACCTGCTTT 
    TCTCAGCAGG GAAAAAGCGA GTCTCTCCGA GTCTTCAAAG GGGATGCAAG 
    TTGTACAGAT TGCAGAAAAG AGCTATCTTT CAGCACCCCA CCATGCAGAG 
    TTGCTTGAAC GGCGATGGGG TGGTTCAACT CGCACCACAG TAGACGCTGT 
    AAAGTTGAGG ATTACTGATC TTCTTAAGGA ATATATTAAG AATGGTGACA 
    CAGCTGAGGC GTGTAGGTGC ATCAGAGAAT TGGCAGTGCC ATTTTTTCAC 
    CATGAGGTTG TCAAGCGAGC TCTCACTCTT GGAATGGAGA GTCCAACTGC 
    AGAAGCTCTT ATTGTCAAGC TTCTGAAGGA AGCATCTGAG GAATTGCTGA 
    TAAGCTCTAG TCAGATGATG AAGGGATTTT CTCGTGTTGT AGATAGTCTT 
    GATGACCTAT CTCTTGATAT ACCATCTGCA AAATCTCAAT TCCAGACATT 
    GGTATCAAAA GCAGTTTCTG AAGGATGGCT CGACTCTTCG TTTGTACATG 
    TAGGTGCCAA TGGGGATGTC CAAGATGATG AACATGAGAA GCTGAGGAGG 
    TACAAGAAAG AGGCTGTTTC TATGATTCAT GAGTACTTTC TCTCTGATGA 
    TGTACCTGAG ATTATTCGCA GCCTCAAAGA GCTTGGTTCT CCAGAGTACA 
    ACCCCGTCTT TATTAAGAAG CTTATAACAA TTGCTATGGA CCGCAAAAAC 
    AGGGAGAAAG AGATGGCTTC AATTCTTCTA TCCTCATTAA GCATGGAATT 
    GTTCTCAACA GAAGACATTG TCAAGGGTTT CATAATGCTT CTTGAATCTG 
    CAGAAGATAC CGCACTTGAT ATATTGGATG CCTCAGATGA GCTGGGACTG 
    TTCCTAGCCA GAGCAGTGAT TGATGATGTG CTTGCGCCTC TGAACTTAGA 
    TGAGATAAGC GGCAAGCTTC CACCAAACTG CAGCGGGGCT GAAACATTGA 
    ACATGGCGCG CTCCCTTGCC ACTGCCCCCA TGCAGGAGAG AGGCTTCTGA 
    GATGCTGGGG CGGTGGGACA GGATGGGTTG TGGAGGACAC AAAGGACAAG 
    ATAGCAAAGC TTCTGGAGGA GTACGAGAGC GGAGGCGATG TAGGAGAAGC 
    TTGCAACTGC ATCCGCGAGC TGCACATGCC GTTCTTCAAT CATGAGGTGG 
    TCAAGAAGGC GCTTGTCATG GCAATGGAAA AGAAGAACGA CAGGATCCTC 
    GGTCTGCTGC AGGAGTGCTT TGGTGAAGGG ATCATCACCA TCAACCAGAT 
    GACCAAGGGG TTCTCAAGGG TGAGGGATGG GCTTGATGAT CTGGCTCTCG 
    ATATTCCTGA TGCCAGGGAG AAGTTCCTGT CCTATGTGGA GCATGCCAAG 
    AAGAGCGGAT GGCTTCTACC CTCATTCGGC GTCGCTACTT CAGCTTGAAC 
    CAATGTTATG AGTGAGCAGG AAGCATCAAG CTGGACCGGA CCGATGAACA 
    ACGAAGCAAG AAGGCACATG CCGTGATATT TGCTGCATCC AAGATATTCC 
    AAGTTGATGA TTTTCATTTG CGTTTTCTGA TGCTTGTCGT TGTGCTTGCG 
    CGTGTAGGTA GCGGAGCGAG CCCCTCTTAC TTGTGGTTGT TGTGGTGGCT 
    TATGTGTCTA GATCTTTCAC CTCTGACACA CCCGTTGCTG TTGTTAGTTG 
    CATTCCATTT TTAACTTCCC CCATAGACCC TTTTTTACTT CACAAGTAAA 
    AACAGAGAAA AGAACCCCCG TCATGTAAAA GTTGCTCCCT GCCTCAGCAT 
    TTGCATCTGT TGCTTACCCC

    Gene models with high sequence identity

    1. AT5G63190.2 [+] show detail - MA3 domain-containing protein
      E-value: 0; Score: 224.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Initiation factor eIF-4 gamma, MA3 23.537
    ProfileScan Initiation factor eIF-4 gamma, MA3 25.301
    ProfileScan Initiation factor eIF-4 gamma, MA3 22.719
    ProfileScan Initiation factor eIF-4 gamma, MA3 21.343
    HMMSmart Initiation factor eIF-4 gamma, MA3 5.2e-34
    HMMSmart Initiation factor eIF-4 gamma, MA3 1.2e-39
    HMMSmart Initiation factor eIF-4 gamma, MA3 5e-35
    HMMSmart Initiation factor eIF-4 gamma, MA3 7.6e-35
    HMMPanther PROGRAMMED CELL DEATH 4 7.1e-175
    HMMPanther PROGRAMMED CELL DEATH 4 3.3e-50
    HMMPfam Initiation factor eIF-4 gamma, MA3 7.7e-33
    HMMPfam Initiation factor eIF-4 gamma, MA3 1.5e-31
    HMMPfam Initiation factor eIF-4 gamma, MA3 5e-31
    HMMPfam Initiation factor eIF-4 gamma, MA3 3.7e-29

    See the detailed result >

    AT5G63190.2

    Model type
    Protein coding
    Short Description
    MA3 domain-containing protein
    Computational Description
    MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR