K20340

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20340

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20340

Determination of introduced cDNA(s)

J033138H09 - Rice Full-length cDNAs - Original: J033138H09

full reading [+] show sequence

GGCCGATCCC TTCCCCCATG GTCGGCGTGC TCGCCGGTTC CACCCAAACC 
CTAGCAACCT CACGCCGCCA CCTCCCTCGC CGCCGGCCGT CGCCCTCGTC 
GCCGTGTGTC TCCGCCGTCA GCCGCCGGCC GCCCTCAACC GCGGGCTGCT 
GATTCTGCTT TCGCCCGCAT CGGCCACCTG ACCGGGAGAG AGAGGAAGAG 
AAGGGGGGAA AGGAAGAGGA GTAAAAAGGA GAAGGAAGAA GAACACAGGG 
GGGAAAAAAG AAGAAGAAGA AGAAGAGAAG AAACGGGGAA AGGGAAGAAT 
TCGGGGATTT CTCTGTGGGT TTCGTCAGAT CCTCCTTCGA TTTGTGGTTC 
TTGCTGCCAG GGTCGTGGTG CGAATCAAGA AGTGGAAACC TCCACCCATC 
GCTCATCTTC ACGCGGTTAA GGAGCGAGCG ATCAAATCAG GGGATAATGG 
AGGAGGACAG CGTCATCAGC AACGGCGGCA GGGAGGAGGA GGTGGTGGTT 
GCGAACGGCA GTGGCGGAGG GGTAGGGGGG ACGGCGAGGA GCAGCGGTGG 
GGGAGGGGGG AAGGTGGTGC AGGTGCTGCA GAGGAACTTT GGCGAGGTGC 
AGGGGATTTT GGAGCAGAAC CGTGTGCTGA TCCAGGAGAT CAGCCAGAAC 
CATGAGGCCG CGACGCCGAT GGCCTCACCC GCAACGTCGC CCTCATCCGG 
GAGCTCAACA CCAACATCGC CCGTGTCGTC GATCTCTACG CTAATCTCTC 
CGGCTCCTTC TCCCGCTCTG TCACTGCCGC TGCCAGCGCC AATAACACCA 
ATGCCACCAA CAGCACCTCC CCTTCTGCTG CCGCCGCAGC CAAGGCAAGC 
AAGCGGTCCC GCGCCACCGA CACCGAGTAG AGCGCCTACA ACTCCGGCTA 
TCCGATTTCT TCTCCTTCTC GCCCCCATTT TGTTCTCGCT TTTTTCTTTC 
TGTCTAGAAT TTTAGATTTA CTGAGCAGCA GGAGGACAGG AGGTAGATTC 
GGTATCCTGC TAAACTCTTT TTCTCTTTTC CCTCTTTTTT TCTCTTGATG 
TAATTCAGAG CTGAGATGGA CATGACAACA GTAAACACCT GCCTTGTCAG 
AGATTAAAGA AAGATGCAGA TATGATAGAC TG

Gene models with high sequence identity

AT1G72630.1 [+] show detail - ELF4-like 2
E-value: 2e-09; Score: 39.30

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1313	1.1e-18
HMMPfam	Protein of unknown function DUF1313	1.4e-12

See the detailed result >

AT1G72630.1

Model type: Protein coding
Short Description: ELF4-like 2
Computational Description: ELF4-like 2 (ELF4-L2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1313 (InterPro:IPR009741); BEST Arabidopsis thaliana protein match is: ELF4-like 4 (TAIR:AT1G17455.2); Has 149 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR