K20515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20515

Determination of introduced cDNA(s)

  • J013069K12 - Rice Full-length cDNAs - Original: J013069K12

    full reading [+] show sequence

    Nucleotide sequence: J013069K12 - full reading
    GGTTTGTCTG CATGTTTTCA GAAAGAGGTG CTTGTGTCAG CATCATTTCT 
    GTTTCTTTGT CTGAAAGGCA GCAAAGGGCC TTCTCAACTT GTTTTCTATT
    AGCTTTGTTC ATTGATTATG GTTTATGTGT TTCCTCATGA TTAACATCTG
    CCTTTGGCTA GCCGATTTTA TGGATACTTG GTTGGAGAAC ATCTTTTTTC
    TGTATTAAAT TTGTTTGGCT GCACTTTTCC AGAGTTCCAG TTTGCTATTC
    AGGTTTAAAG AAAAGTTGAG GAATTGTTCC TTATTCTGCA AAGGTGGTGC
    TTATAAGGAA CCACTCCTCC TACCTTTGTT GACGGGCTAA CACCAAATGG
    CCCAGCTGTT GCACCATCAG GACTCCGCGT TTTATGGGAA GGAACTCCAT
    GGGCGCCGAT GGAGCATTCT TCAGTTCTTT GGCTTCCGTC GCCGCCTGCG
    ATCCACTAAG ATGATCTCTG ACAAGAAACA GAGTCAGGGA AAAGGCAGTG
    GTGGAAGTAG ACGCCGAGGT TCATATGTTC CACTGAAAGA TGAAGACACT
    AGTGTCATGG ACGATGACAA ACACACTGAG ACAACAAAGA AAAACAAGTC
    TTCAAAAAAG AGTTCTGGTA AGGGAAGTTT GGGCTCCTTG ATTCTAAAAA
    AGCTGTATGG AAAGGAAGGC CATAAAGAAA AGATGCTTCC TGTTGCACCG
    AAGCTACTCC GTACCCTTTC AATACATTAC CTGGAAAGCA ATGAGTATGT
    TCTTGATGGT GAATCTGCTT CCAATGGTGA TGGTTCTTCA CAAAGTATTA
    TGCCAAATTC CACAGATACA AATATCCAAA ATGCTACATT CAACACCCAG
    GATGGTTGCG ATAATGATAC AAGTTCTTCG CTTCTAAAGA GAGGTGACAT
    TCATGTGAAA CAAAGGAGCC ACCGTAGCAT TTCAATGGAT GGAGTTCTTC
    ATAAGGTCCC TTATGGACAT AAGGCATCTG AAGATGTAAT TAAAGAAGGA
    CTTTCCCGGT CAGCCTCCGC CACATATGAC AGGGATGGTT TGAAATCTTA
    TACTGTAACT GCTGCAAAAA GACCTGTAAA CCAAGGTTTT CGGCGTTCAC
    GTTCCCTCAC TGAATCATTG GAGAAATATT CTCACTTGCT GGATTCTATT
    TCAAGCAACC AGTCGAAGAG GACGCTGACA AGTTCAAAAT CTACTAGGGA
    TCATTCTTTG GATGCGCCTG CTGTGATGAC TGGGTTGCAG AGTTTGGTTA
    TGACTGCTGA AAATCTCGTG ATCCCAGAAC ATGCCTTGGC ACCATATGTT
    CCAGAGAGAA TTATTGTGGA TGGAGATGTG GATGCTGCTA TGGATGAGAT
    CTCTGGTCAT AAGGATGCTG ATGGCTCTGA AAATACTGTG TTAATCGAAG
    AGTACATCGT TGACAAAAAG TGTGGTGTTT CTGTGTCAAC TGAAGCTAAT
    ATATGTACTC CCCCTTTACT TTCAGAAGTG ATTGATATTT CACAGGGGCA
    TGTAGCAACT TGTGATGACG ATCAGGTTCA CTCATCAACT GAAGATAATA
    TGTGTACTGT TCATTCAAAA TCAGAAGAAA TTGATGTCCC AGAAGAACAT
    GGAACAACTT GTGACGATGA CCATACTAAT TTGTCAACAG AAGCAGGTAT
    GCATACTACT AAAGTTTCAG AAGACGGAAG GATTTCAGAA GAACATACAA
    CAACTTCAGA TGACAAACAA ATTCATTCAT CCGATGTTCT GAAGTCAAGA
    GAAGGTACTT TTTGTGTTCC TCGTCCCAGT CAAGAAATTG AAGCTGAGAT
    AAATCTAAGC TGTGAACAAG AAACTGATAG TCCAATGTCT GTTCTTGACA
    TGACCTTCCC AGATGATCCT GCTAGTCCAG TGAAATATAC AATCCTGGAT
    GATTCGTCGT TGAAGCCAAG AGTCCTCCAT TTAAGTGATA CCGATGATTC
    AGCTGATATG GATCTCAATA CCAGCACTTC CATGGAACTT TCAACTGCTG
    GCCTGGGTCA CAAAAATGTT CAAGAAAGTG ACTCTGATGA ACTAAGCTCT
    CTCCAAGCAG ATCCAAAGAA TGAAGATGGG TTGATCTATG TGAAGAATAT
    ATTCATGAAA TCAAGCTTCC GCAATGAAGT ACTATTTGAT GAATGGTGCT
    CACAGAACAT TACAGTTCTC CAAGAAGAGG ATTGCCAACA CTACGAGGCT
    GCTGCCGCTG CATTTGATTT CACTGAGATG TCAGCTGATC AGCTACTTCT
    GTCTGACTTG ACAAATGAAG TGTTGCTCGA CATCTACAAG AAATATTCTG
    TTTCCAAGTC CTTGCTCTCC CGGTTTTCGT CTTTTGATAG ACCGAAACCT
    GTGGGAAACC ATGCCCTCAA GGAATTGTGG TCTAAAGTAA GCTGCCATCT
    GGATGAACAG CCACAGTCCA GCATAGAAAT TGACACAATT TTGTCGAATG
    ATCTATCCAA GAACGATCAC TGGGTGAATT TTCAGAGAGA TGCTGATCAC
    TTGGGGAACA TGTTGGCAGA CTTTGTGTTT GACAGGCTTC TGACAGAGTT
    CACTCTTCAG CTTGCAAAGT TTTGAGCCTA GCTAGTTTTT TTATTTTGCC
    CCTAAAAATT TTGTTGGTTT AGCTGTTCTA TATGGTGGAA TGCTATTATC
    CTCATGTATA TATTAACATT CTTTCTGTTC TCTCCTTGAA GAGAACAAGG
    TTTGGAGGGG TGGTTGTTAC TTGTTAGGGC TTAGGAATTC AATTCATGTG
    CTGAAAGGTT TTGAAATTTA TATATTGAGT GGGGTTGAAG GAGC

    Gene models with high sequence identity

    1. AT5G02390.1 [+] show detail - Protein of unknown function (DUF3741)
      E-value: 3e-14; Score: 78.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Hypothetical protein T1E22_150 5.8e-15
    HMMPanther PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRAN 5.8e-15

    See the detailed result >

    AT5G02390.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF3741)
    Computational Description
    CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07620.1); Has 4713 Blast hits to 3576 proteins in 331 species: Archae - 20; Bacteria - 252; Metazoa - 1533; Fungi - 380; Plants - 348; Viruses - 15; Other Eukaryotes - 2165 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR