K20526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20526

Determination of introduced cDNA(s)

  • J013028C23 - Rice Full-length cDNAs - Original: J013028C23

    full reading [+] show sequence

    Nucleotide sequence: J013028C23 - full reading 
    CCTCCACTTT TCTTCCATCC ATCCATCCAT CCATTTGATT CAAGAACCCC 
    AATCCAAACC CCCCTCAACT CGCCCCAAAA TCCCTAACTC CCGAAGAAAT 
    CGCCGAGAAA TATCTCTCAT CTTGCCGCCG GATCGAGCCC GATTCCCTGC 
    ACCGAGAGAG AGGTGAGGCG ATCCGGATCT ATCTGATCTC CTCGTTCGTC 
    GCCATTGTTG CAAGTGAAGT GAAGTGGGAG CAGGGATCAT CCATGGCGGG 
    GGTGGGGGTG GAGGAGGAGG AGGCGTTCGA GCACACGCTG CTGGTGGTGC 
    GGGAGGTGTC GGTGTACAAG ATCCCGCCGC GGACGACGAG CGGCGGGTAC 
    AAGTGCGGTG AGTGGCTGCA GTCCGACAGG ATCTGGTCGG GGCGGCTCCG 
    CGTGGTGTCG TGCGGCGACC GCTGCGAGAT CCGCCTCGAG GACCCGGCCT 
    CCGGCGACCT CTTCGCCGCC TGCTTCGTCC TCCCAGGCCA GCGCGAGGCC 
    GCCGTCGAGA CCGTGCTCGA CTCCTCCCGA TACTTCGTGC TCCGGATCGA 
    GGATGGCAGG GGGAAGCACG CCTTCGTCGG GCTCGGGTTC GGCGAGCGGA 
    ACGAGGCGTT CGACTTCAAC GTCGCGCTGT CGGATCACGA GAAGTACGTC 
    AAGAGGGAGC ACGAGAAGGA GGCGGCCGAC GGCGGCGCCG GCGGCGGCGA 
    GGAGAACGAC GACGGGCAGA TTGACATCCA CCCGGCGGTC AATCGCCGGC 
    TCAAGGAAGG TGAAACCATC AGGATAAATG TAAAAAATAA GCCATCAACT 
    GGAAGTGGTA TGCTTTCATC AGCTGGTTTA TCTGGAGGGG CCAGTGCAAA 
    ACCCAAGGCA AGCATGCTCC TTGCGCCGCC ACCGGGTTCA GCTGGGAAGC 
    TTCGATCTCC TCTTCCACCT CCACCAAATG ACCCTGCTGC CGCAAGGATG 
    AATTCTGGCT CTAATGCTGG AATCAGGGCT CCAAAAGAAC CCGCCAAGAG 
    AAATAGCGAC GCCTTTTCAG ATCTTTCTGC TATGAAGCAA AACCTACCGT 
    CATCGACAGA GTCGGCGCAA ACAAAAAGCA CAGGTGCTGG TTGGGCAGCA 
    TTTTGACAAT GAGTCTGCCA TCTGCTGTTG ATAACCTTTT CTCAGGAAAA 
    GGAAAAGAAA ATTGTGTAAC TGAAAAAAAA GAAATCCCTT GGAGGAAGCC 
    TGTATCCGCT CGAATCACAT GGTGATAATG ACTTGCTAGC AACCACTTGG 
    TACTCGAAAA AATAAAAGAT TTACAGGATG ATGTTGTTAT TCATCGTGCG 
    ATGCCACATG GATTCCTGGA GCTTTGGAAG TCTGAAAAAT ATGAGTATGG 
    CTTTCCTTGT TTGTCATATT TGTGTTGTCA GATTTTTCGC ATATGAAACA 
    AGAATCATAC TGACCTCATT GTGTTGTACC CTTAAAGATT TGAGAACACT 
    GTTATGAATG CGGCAGCTTA TGTCACTGAT GCCAAATTTT CTGTAAAACA 
    CGAGCACTGC ATTCTTGTCT TTGTGCATTA ATCAAAAGGT TTTGAGTTGT

    Gene models with high sequence identity

    1. AT1G03900.1 [+] show detail - non-intrinsic ABC protein 4
      E-value: 1e-83; Score: 307.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATE 3.9e-79
    HMMPfam Adaptin ear-binding coat-associated protein 1 NECAP-1 3.7e-53

    See the detailed result >

    AT1G03900.1

    Model type
    Protein coding
    Short Description
    non-intrinsic ABC protein 4
    Curator Summary
    member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.
    Computational Description
    non-intrinsic ABC protein 4 (NAP4); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: extracellular transport; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: Adaptin ear-binding coat-associated protein 1 NECAP-1 (TAIR:AT3G58600.1); Has 448 Blast hits to 448 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 61; Plants - 115; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR