K20532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20532

Determination of introduced cDNA(s)

J023054E20 - Rice Full-length cDNAs - Original: J023054E20

full reading [+] show sequence

GGTCTCTCTC TCTCGCTCTG TTACATCCTG CATCTTTGCT CTTCCAGGTT 
TCAGCATCCA AGGAGCAGCA GCTTGCTTGC TCTTCCAAAA GGAGGAAGAG 
TCGAAGAGTG CGAGAGGCCC GAGCGCAAGC CTGAAGCCTC AAAGGCAAAT 
CCTCCCCCAC AGACTACCAC AAGCTGAAGC TCGAGCGAGC TGTACGAATC 
CATATGCATC CCTTCAACTC CCTCCCCTCT CTTCCCTTTC TCGATTAGTG 
TTAGATCTGA GCTTACAGAG CTATAGCTCA AATCTGCGGC ATTTGGGTTT 
TAGATGCGAT CCTGGCTTTC GTGTCTCTTC TTCCCAGTTC GTTGTATTCC 
TGCTTCTTTT AGTCGATTTC GGACCAATTT AGGTGCGTGC AAGAAGCAGA 
AGTTTTACCT GTTGGCGTGT GATTGGGCGA AGTTCTTGGA ATAGATTTGG 
GCGCAGAGGC ATCGCGCAGC TATTCCCTGC CAAATCTTTA CCCGTTTCGT 
TTTTTTTTTA CTGTGATTTG GATTTATAAA TGAGGTAAAT ATACCAAACA 
GTAGGATTTT TTTTTTCAGG AAGTCAGGAT GAGATCATGG GAGAGGCGAA 
AATAATCAAT AATGTGCCAA AGTGGGTATG AAACCCGACT ACTAGTAGTT 
GACATCGTTG ATTAGTGATT ACTATGAAAC AGCTTCGTGC TGTTGCATTT 
TTTGTGCTAC TTGGCCACAT ATTTCAGAGT TTGTCGACTT GGAAATTGCA 
CTATGAGTAT ATTGCGTGTT ATAGAAAGCT AATTGCCTAT TTTATGGAAG 
CACTTGGAGA CCTCGAAAAT CTTTTGTTGT CTCTTCATCC TACGTATTCT 
TTTTTTGCAA TTCCATGGCC TATGCAACTT AACTGGGTTA TCGAAATCTC 
ACATCCTTCA TTTTTTTATG TTAATTTATA AAATGAGGCA AGTTTTTTTT 
TTTCATTAGT TGCATCTTGA CCTTATGAAC TTTTTGTTGA ACTGAAAATT 
TGTTGGGTAA CAACTTCATT ATCTTTTGCA GTTCTAATGT CTGGATATGG 
GTATGGGGAC ATTCACAACT GATGAAAGCG ACAAACATGA AGAGAGCTAC 
CTGTCGTTGG GTTTGACAGT ATCACAGTCA AAGAAAAACA ACACTGAATA 
CCCAAGGTTC TGTTGCTTCT GGCGGCTTAT CTTGATAGAT CAGTTCAGAA 
GAATGAAGAC TTACTAGATT CCAATAAGAT AAAGGATTCA AGCACCATCT 
TTCATGGTCA CAGGGCTCCA GATCTTAGTA TAAAGCTTTA TGCAGAGCGC 
ATCTTCAAGT ACTCAGAGTG CAGCCCATCT TGCTTTGTGT TGGCCCTCAT 
CTACATGGAG AGATATCTAC AGCAGCCACA TGTGTACATG ACGTCCCTTA 
GCGTTCATCG CTTGCTAATT ACATCTGTGG TGGTTGCTGC CAAATTTACA 
GATGATGCGT AAGAATTCCC TTCATCTGCT ATTCAGTTAC ATTATATATG 
CATCTGCTTT GTAGTACGCT GTAGCATGAT CTACGCCTTT GATAAATCTT 
AGATATTACA TACATTGCTT CCCAATAACT TTCTGAATAC ATTTCTTGCA 
GGTTTTTCAA CAATGCATTC TATGCTAGAG TTGGGGGAAT CAGCACAGTA 
GAGATGAACC GACTTGAGCT GGATTTGTTG TTCAATCTGG ACTTCAGGCT 
GAAAGTGGAT TTAGAGACGT TCGGAAGCTA CTGCTTGCAA TTGGAAAAAG 
AAACAATGGT TCTTGTAATA GATAGACCTA TTCAACAAGT TCACGGCGTC 
AATAGCACTA AAGATTTGAG TCGCAACAGT AGCATTGACG AGTCTTGCAA 
GAGCGAGCTG ATGCGGTACA GCAGTCAGGC TCTCCAAGGA TGTAGCTGAC 
CAACTTGATT TTACATCCTA CATTTTTCAC CAAGGGTTAG GACCACTAGA 
AATTCTTTCA AGAGTAAACA ATTGTGCTTC AGATTGTGTT TAACTGTTCT 
GGAGCTTTTG GATGATAGGG CCCTTCTTTT TTTATTGTAC CACTGTAATT 
CTTTTGAACC ACGATGTTTG AATTTTCACC AGTTTATTGA AAGGCAACAA 
GTCTGAACAT TATTCAATCT AACCAAGCTC AATACTGTAA CATCATGATT 
TCAGTGATTA TGTTGAATAC TAACATCATG ATTTCAGTAC TACACAAGTA 
ATATCTATGG ATTATCT

Gene models with high sequence identity

AT3G05327.1 [+] show detail - Cyclin family protein
E-value: 8e-22; Score: 102.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Cyclin-related 2	2.8e-07
HMMPfam	Cyclin-related 2	5.4e-16

See the detailed result >

AT3G05327.1

Model type: Protein coding
Short Description: Cyclin family protein
Computational Description: Cyclin family protein; CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922); BEST Arabidopsis thaliana protein match is: cyclin p4;1 (TAIR:AT2G44740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR