K20537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20537

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20537

Determination of introduced cDNA(s)

  • J023050B02 - Rice Full-length cDNAs - Original: J023050B02

    full reading [+] show sequence

    Nucleotide sequence: J023050B02 - full reading 
    GGTTCACATA TCAACTGGGG ATCTTCTGCG GGCCGAAGTA TCTTCTGGCA 
    CCGAAATAGG CAAGAAAGCA AAAGAATATA TGGACAATGG TATGCTAGTC 
    CCGGATCAAG TTGTGACAGA TATGGTGGTA TCACGACTAT CACAACCTGA 
    TGTTAGAGAA AGAGGATGGC TTCTCGATGG TTACCCGAGA AGTTATGCCC 
    AGGCACAAAG TCTCGAAAGT ATGAAAATAC GACCAGATAT ATTCATTGTG 
    CTGGAAGTTC CTGATGATAT TCTAATCGAC AGATGTGTTG GAAGAAGGTT 
    GGATCCTGAG ACTGGCAAAA TTTACCACAT AAAGAACTTC CCTCCGGAGA 
    ATGATGAAGT TTCTGCTCGT CTTGTTACAC GCTCTGATGA TACATTTGAG 
    AAGGTTAAAT CACGTCTTGA TACTTACAAA CAAAATTCTG AAGCTGTTAT 
    CCCAACATAC TCAGATTTGC TCAACCAGAT TGATGGAAAT CGACAAGTGG 
    AAGTCGTTTT TAATGAAATA GATTCACTGT TACAGAAGAT CTGTGAGAAT 
    GCTTCATTTA ACATGTTGGC CAAAACAAAT GGAAAACCAC AAGATTCTAA 
    GGATACAACA GCCTCAAAAA ATGAGTTTCG TGGGATTCCA ACAAGATTAA 
    ATAACATTCC ACATTCCAGG GAAATCAGGA AATACTTTTA CAATGATGTA 
    CTAGTAGCCA CCAGACATGC TGTTGAAGAC AAAAAAACTC GGTTGCAGAT 
    AGATATCAAC ATTCCTGAAC TTAACCCTGA AATGGATGTT TATCGCATAG 
    GAACCCTCAT GGAACTTGTG CGAGAGCTTT CTCTTTCCTT TGCTGATGAT 
    GGAAAGCGTG TGAAGGTTTG CGTTCAAGGC TCCATGGGAC AAGGTGCATT 
    TGCTGGTATT CCACTTCAGC TTGCTGGAAC CAGAAAAATT TTGGAAATCA 
    TGGACTGGGG TGAATATGGG GCCAAGGGTA CCTTCATTAA TTTTGGAGCA 
    GTAGGTGCTA GTGAGGTTGA TAAAGAAGAT GACATGTTCA TCCTCATTGC 
    TCCCCAAAAT GCTGTTGGAA ACTGTATAAT TGATGACATG AAAGCAATGA 
    CTGATGCTGC TGGTGACAGA CCTGTGATTC TTGTAAATCC TCGCTTAAAG 
    GATATGCCTG GATCAAGTGG TGTAATGCAA ACAATGGGAA GAGACATGAG 
    GCTAAAATAT GCTGCATCTT TTGAGACTTG TTATTCCTTC CGGCTTCTCT 
    TCTATGCTGG CTCATTTTAT CCTATTATGG GAGCTCTAAG GATGGCTTAT 
    CCTAATAAAT ATGAGATTTA TCGAAGGGTT GATGAACCCA ATGGACAAGA 
    ACGATATGTT CTCTTAGAGG AATTTGTGGA GAAGCCAACT CCTGATGAAA 
    TCACCAATGC ATTCAGACCA CGTAAAAACG AAAATGAAAA GTCAGCGTCT 
    GGATTCTGGG GTTTTTTGAG TGGTATATTA TGAGGCAAAC ATTTCAGTAA 
    AGGCTGAGTA AGAACAACTG AACCTTGGCC TTTTTTTTTT CTTTTTAATC 
    GTCCATGTAA ATATAAGCAG CCATAATGTG AAGCAAATAA TTGATTCACA 
    GGTTTAGTAA ATTCTCCCAG GCATCCAACA TTCATAGAGC GAAATGCTTG 
    TTTTCCTGTT CCTACACTCG ACCATTTCTA AATTGATGTA TAGCTTCATG 
    TACCATATTG ATAAATAGTG GGCAAAATTT GCT

    Gene models with high sequence identity

    1. AT5G35170.1 [+] show detail - adenylate kinase family protein
      E-value: 0; Score: 680.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Adenylate kinase 3.89999861795218e-81
    PatternScan Adenylate kinase 0
    HMMPfam Domain of unknown function DUF1995 5.00000000000001e-50
    FPrintScan Adenylate kinase 5.29999657550189e-17
    FPrintScan Adenylate kinase 5.29999657550189e-17
    FPrintScan Adenylate kinase 5.29999657550189e-17
    HMMPfam Adenylate kinase 3.2e-35
    Gene3D G3DSA:3.40.50.300 2.60000517657733e-55
    HMMPfam Adenylate kinase, active site lid domain 0.029
    superfamily SSF52540 3.49999466863949e-39
    HMMPanther PTHR23359:SF1 3.89999861795218e-81
    superfamily Adenylate kinase, active site lid domain 2.4000006166714e-08

    See the detailed result >

    AT5G35170.1

    Model type
    Protein coding
    Short Description
    adenylate kinase family protein
    Computational Description
    adenylate kinase family protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase, subfamily (InterPro:IPR006259), Domain of unknown function DUF1995 (InterPro:IPR018962), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine monophosphate kinase (TAIR:AT5G47840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR