K20538

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20538

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20538

Determination of introduced cDNA(s)

J033023F23 - Rice Full-length cDNAs - Original: J033023F23

full reading [+] show sequence

GCGGCAGAAA TATTGGCTGC AACTTCAACA ACCAGATCAT CAGATCACGT 
AGCAAGAATA GTTTCAGAAT TCAGAGAGAG AGAGAGAGAG GTGATTGATG 
GGCAGCTCAT CAGGGCTAGT GGACTGGAGG GGGAGGCCGG TGGACACCAA 
GAAGCATGGA GGTGTCAGAG CATCCATCTT CATCCATGCG ATGGTGCTGT 
TGACCAACGC GCCCAACATC GCCAACATGA TGAACATGGT GAGCTACCTG 
CGGGGCACCA TGCACATGGG CGTGGCGCAG GCGTCGACGA CGGCGAGCAA 
CTACTTCGCC GCGCTGCAGA TGTTCTCCAT CCCGGCCGCC TTCCTCGCCG 
ACTCCTACCT CAAGCGCTTC TACACCGTCC TCCTCTTCGC GCCTATCGAG 
ATCATAGGCT ACATCCTTCT AGCAGTTCAA GCGTACACCA CCTCGCTGCA 
CCCGCCGCCG TGCAGCCCGG CGGCCACGGC GGCGAGCGCC ACCACCACCT 
GCGAGCCGGT GCGCGGCGCG AACCTGAGCC TGCTGCTGCT GGGGCTGTAC 
CTGATCCCGA TCGGCGACGG CGCGGCGAGG GCGTGCCTGC CGGCGCTGGG 
CGGGGACCAG TTCGACCTGG GCGACCCGGA CGAGCAGCGG CAGGAGACGA 
GCTTCTACAA CTGGTACACC TTCGCCGTCT CCACCGGCGG CTTCGTCGGC 
CTCGTCTTCA TCGTGTGGGT GCAGAACAGC AAGGGGTGGG GCGTCGGCTT 
CGCCGTCTCC GCCGCCTTCG TCGCGCTCGG CTTGCTCGTC TGGGCCGCCG 
CCTTCCCGCT CTACCGGAAC CAGCTGCCGA TGGGGAGCCC CATCACAAGA 
GTATTGCAGG TTTTTGTAGC GGCATTCAAG AAAAGAAACG TCCGGTTGCC 
GGAGAATCCC AGCGAATTGA AGCAAATTAA CCAAGATGAC GATGCCAATG 
CCCACGAAGT TCTCCCCAAA ACAGATGGAT TTCGGTGCTT GGAGAAAGCG 
GCAGTGGAAA CTGGCAATGA CGCTGGGCCA TGGTCTCTGT GCAGCGTGAC 
CCAGGTGGAG GAGACCAAGA TCGTGCTGCG CATGGCGCCC ATCTTCGTGG 
CCGCTGTTCT CAGCTACATC CCGGTGCCGC TGCTCCTCAG CCTCACCGTG 
CAGCAGGGCA ACACCATGGA CACCAGGCTC GGCGCAGTCC ACATCTCGCC 
GGCGACGCTG TTCCTCATCC CGACCGTCTT CCAGATGGTC ATCCTCATCA 
TCTACGACCG CGCCATCGTG CCGCCGCTGC GCAGGCTCAC GGGCTACGTC 
GGTGGAGTCA CCCACCTCCA GCGGATCGGC ATCGGGTTCG TCGCTACTAT 
CGTTGCCACC GCAATCGCCG CGGTGGTGGA GACGAGGAGG AAGATGACCG 
CCGAGGAGAG CGGGCTAGAG GACGCCACCA CTGGGATCCC GCTGTCCGTG 
TTCTGGCTGA CGCCGCAGTT CTTCCTCATT GGCATTGTCG ACGTCACCTC 
CTTCGTCGGG CTCCTCGAGT TCTTCTGCAG CGAGGCGTCC ATGGGGATGA 
AGTCCATCGG CAGCTCCATC TTCTACTGTA TCCTCGGTGT ATCAGCATGG 
CTCGGCAGCC TTCTCATCCA GGTCACGAAC CGTGTCACCC AGCGAACCAA 
CGGCGGAGGG TGGCTGGATG GGGCCAATTT GAACAAGGGC AAGCTCGACC 
GGTTCTATGT CGTCCTCTGC ATCATCGAGG TGGTGGCGCT GGTGATCTAC 
GTGTTCTTCG CGAGGAGGTA TGTATATAGG AATGACCAGA GGGTTGTGGC 
CCAAGAGCAG AGGAAGGGTG ACACGGGGAA TGGTATGGCT GTGATCTAAA 
CTTGAAATGA AATGAGTCGT GTTTATATTT ACATGGATGT AACGATATAT 
ATGGTAGTAA TAGTAAATAA TTTGGTGGTA CGAGG

Gene models with high sequence identity

AT1G27040.2 [+] show detail - Major facilitator superfamily protein
E-value: 8e-84; Score: 308.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligopeptide transporter	3.1e-63
superfamily	Major facilitator superfamily, general substrate transporter	5.4e-17
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	3.5e-178
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	3.5e-178

See the detailed result >

AT1G27040.2

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR