K20548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20548

Determination of introduced cDNA(s)

  • J023013H17 - Rice Full-length cDNAs - Original: J023013H17

    full reading [+] show sequence

    Nucleotide sequence: J023013H17 - full reading 
    GAGTCTCACA AATAGCTCAC CAGTTCTGAC AACGGCGTGA GCAGACATCA 
    CCTGATCTCA CCAAGAACAT GGCCGCCGGC GAGAGGCCGG CGACCATGCG 
    CGCCGTCCAG TACAGTGGCT ACGGCGGCGG CGCCGCTGCC CTTAAGTTTG 
    TGGAAATCCC TGTTCCTTCT GTGAAGAAGG ACGAAGTTCT CGTAAAAGTA 
    GAAGCTGCAA GCATCAATCA ATCCGATTTG ATGACTCAGA AAGGGATGAT 
    GCGCCCCTTT CACCCGAAAT TTCCATTTAT TCCAGTAAAT AATGTGTCCG 
    GAGAGATCGT TGAGGTTGGC TCTGCAGTAC GCGAGTTCAA AGTTGGTGAT 
    AAAGTTGTCT CCAAACTAGA CTTCTGGACA GCAGGGGGCC TTGCTGAGTA 
    CGTGGCCACA TCGGACAAGC TCACCGTCGC TCGCCCTGCC GGAATCTCCG 
    CCGCTGACGC GGCGGGTGTG CCCGTCGCCG GCCTGACAGC GCTCCAGGCG 
    CTCAAGGCCA TCGGCACCAA GTTCGACGGC TCGGGCACCA GCGGCGGCGC 
    CGACGTTCTG ATCACCGCGG CCTCCAGCGG CGTGGGCACG TACGCCGTCC 
    AGCTCGCCAA GCTCGGCAAC CACCGCGTCA CCGCCACATG CGGCGCGCGC 
    AACCTCGGCC TCGTCGCTGG CCTCGGCGCC GACGGGGTCC TCGACTACAA 
    GACCCCGGAG GGGGCCGCGC TGTCGAGCCC CTCCGGCAAG AAGTACGACT 
    ACATCGTCAA CATCAGTAAC AAGAACAAGT GGTCGGTGTT CAAGCCGCGC 
    CTGAGCAGCC ATGGCAGGGT CGTCGACGTC GCCCCCAACT TCGGCAACTT 
    CGTGGCGTCG GTGGTGACGC TGTTCTCCCG GAGGAAGAAG CTGTCGCTGG 
    TGAGCCTGAA GATGAGCAAG GAGGACCTGG GGTTGCTGCT CGAGCTGATG 
    CGGGAAGGGA AGCTCAGGAC GGTGGTCGAC TCGCGGCATC CGTTCGAGAA 
    GGCGGCGGAC GCATGGGCGA GGAGCCTCAG CGGCCATGCC ACTGGAAAGG 
    TCATCGTGGA GATGTGAGAT TAAGATTCAG CGATGGCTCT AAGCTTTGCT 
    GTCATTTAAA TGTATGTGCT ATTACCATAT TTGATCATGC CATCGGTACA 
    CAACAATC

    Gene models with high sequence identity

    1. AT4G13010.1 [+] show detail - Oxidoreductase, zinc-binding dehydrogenase family protein
      E-value: 4e-87; Score: 318.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GroES-like 2.3e-36
    superfamily NAD(P)-binding domain 6e-24
    HMMPanther ALCOHOL DEHYDROGENASE, ZINC-CONTAINING 2.4e-81
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 2.4e-81
    Gene3D no description 1.7e-33
    HMMPfam Alcohol dehydrogenase GroES-like 8.2e-13
    HMMSmart Polyketide synthase, enoylreductase 9.4e-11

    See the detailed result >

    AT4G13010.1

    Model type
    Protein coding
    Short Description
    Oxidoreductase, zinc-binding dehydrogenase family protein
    Computational Description
    Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 34133 Blast hits to 33976 proteins in 2527 species: Archae - 549; Bacteria - 21108; Metazoa - 1143; Fungi - 3531; Plants - 1393; Viruses - 3; Other Eukaryotes - 6406 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR