K20619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20619

Determination of introduced cDNA(s)

  • J013043D02 - Rice Full-length cDNAs - Original: J013043D02

    full reading [+] show sequence

    Nucleotide sequence: J013043D02 - full reading
    CCTCCAATAG CGACTCCGGC AAGAAGGGCG GCAACCCTCT GGAAGCCATG 
    GGCGCCTTCT TCTCGTCGCA GGTGAACCGC CGGAAGCTGG TCACCAGCGA
    GAAGCAGGCG CTGGCCACGC GGCTGTCCGC CGGCGGCGAG GCGTTCCCCG
    GCAGCGAGCA CCGGCCGGCC GACCGGAAGA CGTGGATGGC GGAGCTCGGG
    CCGGAGCGGC TGCGCGTGCA CCAGCTGGTG TGGCCGGGGA CGCACGACTC
    GGCGACGAAC AAGATCGGCA TCCCGTTCGT GACGCGCCCC TTCGCGCAGT
    GCCAGTCGCT GTCGGTGTAC GAGCAGCTCG CCGCGGGCGC CCGCGTCATC
    GACGTGCGCG TCCAGGAGGA GCGGCGCGTC TGCCACGGCG TGCTCGCAAC
    CTACTCCGTC GACGTCGTGC TCGACGACGT GAGGAGGTTC CTCGGCGAGA
    CGGCGTCGGA GGTGGTGATC CTCGAGGTGC GCACCGAGTT CGGCCACGAC
    GACCCGCCGG AGTTCGGCAG GTACCTGGTG GAGCAGCTCG GCGAGCACCT
    GATCCCGCAG GACGAGGCGG TGTTCCACAA GACCATCGCC GAGCTCCTCC
    CGCGGCGGCT CATCTGCGTG TGGAAGCCGC GCAAGTCGCC GGCGCCCAAG
    CCCGGCGAGC CGCTGTGGAG CGCCGGCTAC CTCAGGGACA ACTGGATCGA
    CACCGACCTG CCGGAGACCA AGTTCGAGAG CAACGTCAAG TTCCTCGGCG
    AGCAGCCGCC GGTGGCCGAC CGGAGGTTCT TCTACCGGGT GGAGAACACG
    GTGACGCCGC AGGCCGACAA CCCGGTGCTC TGCGTCCGGC CGGTCACGCG
    GCGGATCCAC GGCTACGCCC GCCTCTTCAT CGCCGAGGTC TTCGCCAAGG
    GCCTCGGCGA CAAGCTGCAG GTGTTCTCCA CCGACTTCAT CGACGGCGAC
    TTCGTCGACG CCTGCGCCGG CGTCACCAAG GCCCGCGTCG ACGGCGCCGC
    GTGAGATTGC ATGGCCGGGC CCTGTAGTAA TTAGAGGGGT CGCCGCGTTT
    AGAGGATTTG CTTCGTTTCG CCGGTGTCGC AGCGTACGTA CAGATTAGTT
    TGTGTTGTTC GTGTTAGACA CGTGATTTAT GAATGATTTA TTATCATGCA
    TGTGTTGGGC GTTCGTGTGT GATTTAATTG TTGAAATGTA TATAGTGGTG
    AAATTGCTCG TGT

    Gene models with high sequence identity

    1. AT4G38690.1 [+] show detail - PLC-like phosphodiesterases superfamily protein
      E-value: 3e-130; Score: 462.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phospholipase C, phosphatidylinositol-specific , X domain 4.7e-08
    HMMPanther UNCHARACTERIZED 1.7e-05
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.5e-60
    ProfileScan Phospholipase C, phosphatidylinositol-specific , X domain 11.255
    HMMSmart Phospholipase C, phosphatidylinositol-specific , X domain 0.0026
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 3.5e-52

    See the detailed result >

    AT4G38690.1

    Model type
    Protein coding
    Short Description
    PLC-like phosphodiesterases superfamily protein
    Computational Description
    PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT4G34920.1); Has 888 Blast hits to 888 proteins in 280 species: Archae - 0; Bacteria - 676; Metazoa - 61; Fungi - 70; Plants - 52; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR