K20636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20636

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K20636

Determination of introduced cDNA(s)

  • J023052D02 - Rice Full-length cDNAs - Original: J023052D02

    full reading [+] show sequence

    Nucleotide sequence: J023052D02 - full reading 
    GGGAGCCGAA CACTCGCTGG CGGGCGCGCG CGCGCGCAGC CGGGGAACCG 
    GGGGGGAGAC AGGGTGGTGG TGGTGAGGCG GGGGCGAGCG CAATGCAGGA 
    GCCAAAGCAC ACCGATCCGG CGGCCATGCG CGGGGCGCAC CACCGCCGGG 
    CCAGATCTGA GGTCGCCTTC CGCCTGCCCG ACGACCTCGA CCTCGGCGGC 
    GGCGGCGCGG GGGCGTTCGA CGAGATCGGC TCCGAGGACG ACCTCTTCTC 
    CACCTTCATG GACATCGAGA AGATCTCCTC CGGCCCCGCC GCCGCGGGGG 
    GCTCCGACCG GGACCGCGCC GCGGAGACGT CCTCGCCGCC GCGCCCCAAG 
    CACCGCCACA GCAGCTCCGT CGACGGCTCC GGGTTCTTCG CCGCCGCGCG 
    GAAGGACGCC GCCGCATCGC TGGCGGAGGT CATGGAGGCT AAGAAGGCCA 
    TGACCCCCGA GCAGCTCTCC GAGCTCGCCG CCATCGACCC CAAGCGCGCC 
    AAAAGAATTC TGGCGAACAG ACAATCTGCA GCTCGGTCAA AAGAGAGAAA 
    AGCTCGTTAC ATAACAGAAC TTGAGCGGAA GGTTCAAACT CTTCAGACTG 
    AAGCCACTAC TCTCTCAGCA CAACTCACAC TATTTCAGAG AGACACAACT 
    GGGCTTTCTG CAGAAAATGC AGAGCTCAAG ATACGGTTGC AGGCCATGGA 
    ACAACAGGCT CAACTGCGAG ATGCTCTGAA TGATGCACTA AAGCAGGAAC 
    TGGAGAGGCT TAAGCTCGCT ACTGGTGAGA TGACAAATTC CAATGAGACA 
    TATAGCATGG GACTGCAACA TGTCCCATAC AACACCCCTT TCTTCCCTCT 
    CGCCCAGCAT AATGCAGCCC GCCAGAACGG TGGAACCCAG TTGCCACCAC 
    AATTCCAACC ACCCCGTCCT AATGTGCCCA ATCACATGCT ATCCCATCCA 
    AACGGTTTGC AAGATATCAT GCAGCAAGAC CCTCTTGGCC GGCTTCAGGG 
    TTTGGACATC AGCAAAGGGC CTCTAGTTGT GAAATCAGAG AGCAGCTCGA 
    TCTCTGCAAG TGAAAGCAGC AGCACCTTCT AACCAGGCCT ACCCACCGAG 
    CCCACAGTTC CATTAGATTC GTTTGTTCAT AGCCTGACAT CCTCGCGCTG 
    CTCCCTGTTC TGTAAGCTTA TTATTTATTC AATTCGTTCG ATTTAGTTGA 
    AATTGTTCGT AATTGCAGTG GCTGATCTAT TCCCTTCTGT GGACATGATT 
    CCTGTACCCC TCACATCCAT TTGTTTTGGG TTCATCTCCT GTGTGCTGTG 
    TTTGGGATTA TCAGGGCACC AGGACTGGCT TTCTCCGAGA ATACTGTGTT 
    CTTTGTGGTC GTGTGGACTT GTTCACCATG GATTCAATTC AACCTTTTGA 
    AAAGATGCAT GTATTCTCTG ATTTTTTTTT CTCAGTCATG TACATGTCAC 
    TGTTATGCTA GTTTGATTGA TGTGTACTGT GGAATTTGTG GATAACAAAA 
    GGAGTTAAGA TTGGGATTGC TGTGGAACCA TCTGTATCGT ATATTCGTAT 
    GTGACTAATG TTGGGAAATT GTTCTATTCT TGTTCACCAT ATGCATGTGG 
    GGTAACTTTT CC

    Gene models with high sequence identity

    1. AT2G40620.1 [+] show detail - Basic-leucine zipper (bZIP) transcription factor family protein
      E-value: 2e-58; Score: 224.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam bZIP transcription factor, bZIP-1 2e-07
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.599
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 1.5e-14

    See the detailed result >

    AT2G40620.1

    Model type
    Protein coding
    Short Description
    Basic-leucine zipper (bZIP) transcription factor family protein
    Computational Description
    Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G31370.5); Has 1748 Blast hits to 1720 proteins in 178 species: Archae - 0; Bacteria - 19; Metazoa - 312; Fungi - 66; Plants - 1196; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR