K21016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21016

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21016

Determination of introduced cDNA(s)

  • J013072D16 - Rice Full-length cDNAs - Original: J013072D16

    full reading [+] show sequence

    Nucleotide sequence: J013072D16 - full reading 
    GCTCCTCTTT CTTGGAGCAA AAGAAGAAAA AAAAATAAAT CCAATAACAC 
    CACAAGGAGC CCGAAGCGAG GAGAGAGAGA GAGATGGCGC TCGCAATCCT 
    GGCGAGGAGG CGGGCGGCGG AGGCGCTGCT GCGGCGGCCG CTGGGGGCGG 
    CGGGGGTGTC GGCGCTGAGG GCGTCGTACG CGGCGGTGGC GGGGGAGGAG 
    AGCGACGTGG TGGTGGTGGG CGGCGGGCCG GGAGGGTACG TGGCGGCGAT 
    CAAGGCGGCG CAGCTGGGGC TCAAGACCAC CTGCATCGAG AAGAGGGGCA 
    CCCTCGGCGG GACATGCCTC AACGTCGGCT GCATCCCCTC CAAGGCTCTG 
    TTGCACTCAT CTCATATGTA CCATGAAGCA AAAAGTTCCT TTGCACACCA 
    TGGAGTGAAA TTTTCCAATC TGGAGGTAGA CCTCCCAGCT ATGATGGCAC 
    AGAAAGACAA GGCTGTGGCA GGCCTGACTA AGGGGATTGA AGGTCTCTTC 
    AAGAAGAACA AAGTGACGTA TGTCAAAGGC TTTGGGAAAC TTGCTTCGCC 
    CTCAGAGGTG TCTGTTGATC TGAGCGATGG TGGCAGCACA GTTGTCAAAG 
    GGAAAAACAT AATCATTGCT ACAGGGTCTG ATGTAAAATC ACTCCCTGGA 
    GTCACAATTG ATGAGAAGAA AATCGTCTCA TCTACTGGGG CCTTGTGCTT 
    GTCAGAGATT CCAAAGAAAT TGGTGGTTAT TGGAACAGGT TACATTGGTC 
    TGGAGATGGG TTCGGTCTGG AACCGCCTTG GTTCAGAGGT CACCGTTGTT 
    GAATTTGCCC CAGATATAGA TCCATCAATG GATGGTGAAG TCAGGAAGCA 
    GTTCCAGCGC ATGTTGGAGA AGCAGAAGAT GAAGTTCATG CTCAAGACAA 
    AGGTAGTTGG GGTTGATACC TCCGGAGATG GTGTGAAGCT AACACTTGAA 
    CCTGCAGCTG GAGGTGAGCA GAGTGTCATT GAAGCTGATA TTGTATTGGT 
    TTCTGCTGGA AGAGTCCCAT ATACTGCTGG TATTGGGTTG GAAAGTGTTG 
    GTGTTGAGAC AGACAAAGCT GGCAGGATCC TCGTGGATAA GCGCTTCATG 
    ACTAACGTCA ATGGAGTCTA TGCAATTGGG GATGCCATCC CTGGGCCCAT 
    GCTTGCCCAC AAAGCTGAAG AGGATGGTGT TGCCTGTGTT GAGTTCATTG 
    CTGGCAAGGA GGGGCACGTC GACTATGACA CAGTGCCTGG TGTGGTCTAT 
    ACACATCCAG AGGTCGCGTC TGTTGGAAAG ACTGAAGAGC AGGTGAAAGC 
    TTTAGGAATT CCCTACCGTG TTGGCAAATT TCCGCTGTTG GCAAACAGCC 
    GTGCAAAGGC CATTGACGAT GCTGAGGGCT TGGTGAAGGT GGTGGCTGAG 
    AAGGAAACTG ACAAGATTCT GGGCGTGCAT ATCATGGCTC CCGGTGCTGG 
    AGAGATAATA CATGAGGCTG TCCTTGCTTT GCAGTATGGA GCATCAAGTG 
    AGGACATAGC TCGTACATGC CACGCTCATC CCACCGTGAG CGAAGCCTTG 
    AAGGAGGCCT GCCTGCAAAC CTTCACAAAG GCGATTCACA TTTAAGTTCT 
    GTTTTGCTTT TAACATCCAA ACTGCTTGGC TTCACAAATT CCAAAATTTT 
    GTAATAATTT TGGATATATG GGATCAAAAA GCCACTGTCT GTCATTTTAC 
    TCTCGTTCGT GATGCTGTGA ATTGACACTA GTTGCCACAG CCAATAGTAT 
    ATGCTATTGA TTCCATTCCC TTAGATGCC

    Gene models with high sequence identity

    1. AT1G48030.2 [+] show detail - mitochondrial lipoamide dehydrogenase 1
      E-value: 0; Score: 746.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan PNDRDTASEI 1.2e-81
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3.3e-37
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3.3e-37
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3.3e-37
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3.3e-37
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 3.3e-37
    FPrintScan Mercuric reductase 2.2e-13
    FPrintScan Mercuric reductase 2.2e-13
    FPrintScan Mercuric reductase 2.2e-13
    FPrintScan Mercuric reductase 2.2e-13
    FPrintScan Mercuric reductase 2.2e-13
    FPrintScan Mercuric reductase 2.2e-13
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1.3e-49
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation 2.2e-39
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 2.7e-20
    superfamily FAD/NAD(P)-binding domain 5.3e-73
    superfamily FAD/NAD-linked reductase, dimerisation 3.2e-43
    Gene3D no description 3.6e-66
    Gene3D Pyridine nucleotide-disulphide oxidoreductase, dimerisation 7.5e-43
    PatternScan Pyridine nucleotide-disulphide oxidoreductase, class I, active site 0
    HMMTigr Dihydrolipoamide dehydrogenase 7.2e-232
    HMMPanther Dihydrolipoamide dehydrogenase 9.2e-255
    HMMPanther DISULFIDE OXIDOREDUCTASE 9.2e-255

    See the detailed result >

    AT1G48030.2

    Model type
    Protein coding
    Short Description
    mitochondrial lipoamide dehydrogenase 1
    Curator Summary
    Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.
    Computational Description
    lipoamide dehydrogenase 1 (LPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, copper ion binding, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to light stimulus; LOCATED IN: mitochondrion, apoplast, mitochondrial respiratory chain complex I, mitochondrial matrix; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: lipoamide dehydrogenase 2 (TAIR:AT3G17240.3); Has 41519 Blast hits to 41478 proteins in 3269 species: Archae - 1065; Bacteria - 30177; Metazoa - 918; Fungi - 552; Plants - 652; Viruses - 0; Other Eukaryotes - 8155 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR