K21112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21112

Determination of introduced cDNA(s)

J023083K22 - Rice Full-length cDNAs - Original: J023083K22

full reading [+] show sequence

GCCCCGCCGA GATGGCGGCT GCGACGGCGG CGGCGGGAGC AGCCGCCGCC 
GTATCCCTGC TCGCGTGCTA CCTCCTCCTA CACAGGGACG GCGCCAAGCT 
GCCGTGGGTC GGGCCCACGA CGAGGTCCTC CCGCTCGAGC GGCCGGCGGA 
CGCGGCGGAA GGGCCTCGTG GAGGCCATCG GAAACACGCC CCTCATCCGC 
ATCAACAGCC TCTCCGACGC CACAGGGTGC GAGATCCTGG GGAAGGCCGA 
GTTCTTGAAT CCCGGAGGCA GCGTGAAGGA CCGTGTGGCA GTTAAGATCA 
TCGAAGAGGC TCTGGAATCT GGTGATCTTC TCTGTGGTGG TACAGTAACA 
GAGGGGAGTG CTGGAAGCAC AGCTATTAGC TTGGCCATTG TTGCTCCTGC 
TTATGGCTGC AAATGTCATG TTGTTATTCC TGATGATGCT GCCATTGAGA 
AGTCTCAAAT AATCGAGGCG CTCGGGGCTA CAGTTGAACG AGTGCGCCCT 
GTTTCAATTA CACATAGGGA CCATTTTGTC AATATTGCTA GAAGAAGGGC 
TTTAGAAGCA AACAAATCAG CAGCGGCCCA GAGAGAGTCA AGGTACAAAG 
AAACTAATGG TTCAGCGCAT GTCAATACTA GAATAATGCA CAGCAAGATA 
ACAGCAAGCA AAGGGGAGTC AAACAAGGCA CTAACTAACT GTTCAGCCAA 
TTCTGAAATA CAATATAACG GGAAGTGTGA TCATGACTCT GATTCAAAGG 
GAGGTTTCTT TGCTGACCAA TTTGAGAATA TGGCAAACTA CCGAGCCCAT 
TATGAATGGA CTGGTCCTGA GATATGGCAA CAAAGTAAAG GGACACTGCA 
TGCCTTTGTT GCTGCAGCTG GCACTGGTGG CACAATTGCT GGAGTCTCAC 
GGTATCTTAA GGAAAAGAAC ACAAACATCA AATGCTTCTT AATGGACCCA 
CCTGGATCTG GTCTGTTCAA TAAGGTTACT AGAGGGGTGA TGTACACAAA 
AGAGGAAGCT GAGGGCAAAA GGCTGAAGAA TCCTTTTGAC ACTATTACTG 
AAGGAATTGG AATCAACAGG GTTACAAAAA ATTTTATGAT GGCGGAACTG 
GATGGAGCTT ACCGGGGAAC AGATAGGGAA GCTGTTGAGA TGTCAAGGTT 
CTTGTTGAAA AATGATGGGC TGTTCGTTGG GAGTTCTTCA GCCATGAATT 
GTGTTGGTGC TGTAAGAGTT GCTCAAGATT TAGGTCCAGG ACATACAATT 
GTGACAATTC TCTGTGACAG TGGGATGAGG CATCTAAGTA AGTTCTTCAA 
TGACCAATAT TTGGCTAACC ATGGCCTGAC ACCAACAGCT ACCGGTCTGG 
AATTTCTTGA TTGATGAGAA AATTTCATGG GGAATATACA GTCTCAGCAA 
GTTTTTCATG ATGTGATGTC TGCCCTGATA GCTGGTGAAT ACTGACGAGC 
TGGAACATAG CAGATCTCAT CCAGCAAGAG AACTGCTTGC ATCTCTGGAT 
TGGTACAAAA ATTTTGTCGT ACGGCTTTAA GTTATCCTCA AAATACATTG 
TGATGTATTT TAATTAGCTG GCATTGCCAT TGATAGGGGC TGGTATAGCC 
AAACCTGCAT TTCTTGTAGT TTTGGCATAT TTCATTAGGA TGTATTCAGT 
AAACTGTAAA AGGATGTTTT TTTCCCACTG AATCTTATAT TAGTGTTTTT 
TGGCTAAGAG ACTGGGAATT TGTTCGGGAG ATCATTTATT CTTTTG

Gene models with high sequence identity

AT1G55880.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
E-value: 1e-157; Score: 553.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	4.6e-21
Gene3D	no description	3.9e-53
HMMPfam	Pyridoxal phosphate-dependent enzyme, beta subunit	7.4e-53
superfamily	Pyridoxal phosphate-dependent enzyme, beta subunit	8.6e-79
HMMPanther	CYSTEINE SYNTHASE	1e-93
HMMPanther	SER/THR DEHYDRATASE, TRP SYNTHASE	1e-93
PatternScan	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	0

See the detailed result >

AT1G55880.1

Model type: Protein coding
Short Description: Pyridoxal-5'-phosphate-dependent enzyme family protein
Computational Description: Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, metabolic process, cellular amino acid metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: L-cysteine desulfhydrase 1 (TAIR:AT5G28030.1); Has 17388 Blast hits to 17372 proteins in 2648 species: Archae - 443; Bacteria - 11523; Metazoa - 365; Fungi - 537; Plants - 503; Viruses - 2; Other Eukaryotes - 4015 (source: NCBI BLink).
Link: InterPro Scan - TAIR