K21142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21142

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21142

Determination of introduced cDNA(s)

J033007K19 - Rice Full-length cDNAs - Original: J033007K19

full reading [+] show sequence

GTCTCCCTCG CTTCGCATCT CGCCTCTGGT GATGAGAGCG GACAGAGCCG 
AGCTGAGGGA ATTAAAACCC CCTTATCCTC TCTCTGCCCC CGGGCTGCCA 
TTGCTGGATC CAACCATCTG CCCCCGCCAC GCCTCGTCTC GCGCTAGCCG 
TCTCGCGTGC GTGCGCGCGC GTCGCGCCGC GCCCTCGTTT TGGAGCCTTG 
CGCCCCGCTA CTTTCCCCTT GTCCCGAACC CGGAATCCGC CTCGGCGAGC 
GTCCTTGCTT TGCTTCTTTG GTATCTGTGC TCCCGTTTGC TTTGCCTTGC 
CACGCTCCTT CCTCCTCCTC ATTGTCTCCT CCCGTGGTTC GGCTCATTCT 
GTTCTTGGGT TGACGCGGGC TGCGTGCGTG CGTGCGTGCG TGCGGAGGCG 
ATGTCGTCGG CGGTGGATGC CATCTCCTGT TCCAAGGGCA TCGCGGCCCC 
GCCGACGGAG GAGGCGACGA AGGAGCGGGT GGCGGTGGTG GGCAAGAACG 
GCGGCGTGGA GCACGGCGGC GACGCCGCGA CGATGAACGG GAAGCAGTGC 
GGCGAGGCGC CGCATTGCCG CAAGGAGAGC AACGAGGAGG AGGAGGATGA 
CGAGGAGAAG GCCCCCAAGG CCATCGACCT CGGCCCGCGT GTCAGCATCA 
AGGACCAGCT CGAGAAAGAC AAGGACGACG AGAGCCTGAG GCGGTGGAAG 
GAGCAGCTGC TCGGCAGCGT GGATTTGAAC TCCGTAGGAG AGACGTTGGA 
GCCTGACGTG AAGATCATGA GCCTGGCCAT CCTCTCGCCC GGCCGGCCGG 
ACATCTTCCT GCCGCTGCCG GTGGAGCCCA ACGCCAAGGG CGTCTGGTTC 
ACCCTCAAGG AGGGCTCCCT CTACAAGCTC AAGTTCACCT TCTCCGTCAG 
CAACAACATC GTCTCCGGCC TCCGCTACAC CAATGCCGTC TGGAAGACCG 
GCATCAAAGT TGACAGCCAC AAGGAGATGC TCGGCACGTT CAGCCCCCAG 
CCGGAGCCGT ACACGTACGT GACGCCGGAG GAGACCACGC CGTCCGGCAT 
GTTTGCGAGG GGATCCTACT CGGCCAGGAC GAAGTTCCTC GACGACGACC 
GGAAATGTTA CCTGGAGATC AACTACACCT TCGACATACG CCGAGAGTGG 
CCGGCGTTGA GCTAATGATC AGCTGAGCCG TTTTTCCGGT GGTGGTCGCC 
GAGTAGAAGG GTGAGGCGCC GGCCGGCCGG CATTCATGCT GTGTGTTACT 
GTCGTCACCG TTGGGAGCAG AAGTGGACAT TTTTTTTTCG TCTCGTTTGC 
GTCTTATCCA CTCATTTTTT TTTTTGGTTT GATTCACCCT AGGGTTCTTT 
TGTATATTGT TGCCCTGTCT GTCCCGGTTG TTTGCTGTGT TAACGCCGTG 
TTAGACGTAC GCTTTGTCAG TTCAAGTTGA TGTTATGCTA TGTGTTATGT 
CAGTGTGCGT GTTTGAGCTT CTGTCACTCT GTCAGGGTCC TGTTTCGATC 
GAACTGCCTG TTTGAGTTCA GAGCAACGCA GCTGCATTTC TTGTAAACAC 
TGGGACTGTA TCTGACGCTT CCCTTACAAA TTTCCCATTC TGTGTGCTTC 
TCTCTGC

Gene models with high sequence identity

AT3G07880.1 [+] show detail - Immunoglobulin E-set superfamily protein
E-value: 8e-72; Score: 268.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RHO GUANINE DISSOCIATION INHIBITOR-RELATED	2.5e-120
HMMPanther	RHO protein GDP dissociation inhibitor	2.5e-120
HMMPfam	RHO protein GDP dissociation inhibitor	2.4e-74
superfamily	Immunoglobulin E-set	1.4e-74
Gene3D	RHO protein GDP dissociation inhibitor	3.1e-59

See the detailed result >

AT3G07880.1

Model type: Protein coding
Short Description: Immunoglobulin E-set superfamily protein
Computational Description: SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 660 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link: InterPro Scan - TAIR