K21404

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21404

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21404

Determination of introduced cDNA(s)

  • J013089D16 - Rice Full-length cDNAs - Original: J013089D16

    full reading [+] show sequence

    Nucleotide sequence: J013089D16 - full reading 
    TTATTGAAAA GGAGGATGTT TTGCCTCCTA TTGTTGTGCT AGAGACATTG 
    TCGAAAAACC CATGCTTGAC ACTGTCAGTT GTCAAGGATT ACATTGCCCG 
    CAAACTTGAG CAAGAATCAA AGCTAATCGA AGAAGATAGG AAATCTATTG 
    ACAAGTACCA GGATGAGACA GAACTGATGA AAAGGGAGAT AGAAGACCTC 
    AAGACAAACG CAAAGGTCTT TCAGCTTAGC AAGTGTACGA CGTGCACCTT 
    TACGCTTGAC CTTCCTGCGG TCCACTTCAT GTGCATGCAC TCCTTCCACC 
    TTCGCTGCCT TGGGGACAAT GAGAAAGAAT GCCCAGAATG TGCTCCCGAA 
    TATAGATCTG TCATGGAGGC AAAGCAGAAG CTAGAACATA ACGCTAGAGA 
    CCATGATCTC TTCTTCAGGC AGCTGAGGGG TTCAAAGGAT GGCTTCTCTG 
    TCGTCGCAGA CTATTTTAGC AAGGGCATTG TGAGTAAAAC AGCCATTCCT 
    CCTGAAAATG GCCGATAAGG AGTGGAAGAA AACCAGCTCT ATTACTCCCC 
    ATGTACAGGA TTTGACGATG TTTTATCTCC TTTCCCATGG TGTTTTGTCA 
    TCATGTGAGT TTCAGGGTCC ATCACACAGC ATGTGCAGGC CTTTAATAGC 
    GAGTTCCTCT AGTGTACCAA CTTATGTATG CTTTCTGGCC TATTTTTTGT 
    GGCCGTGCTA TGGAGTTCTG TTGTGCTTGA CATTGTAAAT CCTTCTGTTG 
    GCAAACGCTG CCTAGTTTTT GGCATTTAGT TTTGATGGAA GAAGATTCAC 
    GGCCATCATG TTTGAGTTCG

    Gene models with high sequence identity

    1. AT2G05170.1 [+] show detail - vacuolar protein sorting 11
      E-value: 2e-76; Score: 282.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam VPS11_C 1.2e-17
    HMMPanther VACUOLAR MEMBRANE PROTEIN PEP5, 11 1.6e-39
    HMMPanther VACUOLAR MEMBRANE PROTEIN RELATED 1.6e-39
    ProfileScan Zinc finger, RING-type 9.288
    Coil coiled-coil 0
    superfamily RING/U-box 2.7e-06

    See the detailed result >

    AT2G05170.1

    Model type
    Protein coding
    Short Description
    vacuolar protein sorting 11
    Curator Summary
    Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.
    Computational Description
    vacuolar protein sorting 11 (VPS11); FUNCTIONS IN: transporter activity, binding, zinc ion binding; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 11 (InterPro:IPR016528), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 716 Blast hits to 615 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 251; Fungi - 269; Plants - 42; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR