K21427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21427

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21427

Determination of introduced cDNA(s)

  • J033037N08 - Rice Full-length cDNAs - Original: J033037N08

    full reading [+] show sequence

    Nucleotide sequence: J033037N08 - full reading 
    GCCCGAAACC CTTCTCCCTC GCGTCGTTCC GCCGCCGCCG CCGTCGTCCA 
    GGGCGAAGCT TGCGTAGAGA TAGCGGCGAC GATGATGGCG GAGGAGGGGA 
    CGCAGCAGCT GCCGTACGTG CGGGAGACGG TGCTGAAGAA GCGGAAGGTG 
    AACGAGGACT GGGCGGTCAA GAACCGGGAG CGGAAGGCGG CCAAGAGGCA 
    GCGCCGCCGC GACGACGGCA AGGGCGCCAT CAAGAGGCCC GAGGACTTCG 
    TCAGGGAGTT CCGCAACAAG GAGCTCGACT TCGTCCGGAT GAAGACCCGC 
    CTCAAGGTCC GCAAGCTCCC CCCCGCCGAG ACCCTCAACT CCAAGCTCGT 
    CTTCGCGATT CGCATCCCTG GCACAATGGA CTTGCATCCA CACATGAGGA 
    GGATTTTGCG CAAGCTGCGG CTGACGCAGG TCCTCACCGG CGTGTTCCTC 
    AAGGCCACTG ACGCTACTAT GAAGAGGCTT CTTGTTGTGG AGCCGTTTAT 
    CACTTATGGG TTCCCAAATT TGAAGAATGT GAAGGATCTT ATTTACAAGA 
    AGGGCCGTGG GTTCCTGGAC AAGGAACCTT TCCCTCTTAC CAGCAATGAT 
    CTCATTGAGA AGGCTCTGGG AGAATATGGC ATCATATGTT TGGAAGATCT 
    TGTGCATGAA ATCGCATCAG TTGGCCCACA CTTCAGAGAA GCTTCAAATT 
    TCCTCATGCC CTTCAAGCTC AAGTGTCCAG AGAGGAGGTT GCAGATGAAG 
    AAGAAACCCT TCAAGGATGG TGGTGACTCA GGGAACCGCG AAGATAAAAT 
    CAATGAATTA ATTGAGAAGT TGAATTAGTG CAGAACCTAT GCCCAGTCGT 
    AATTCATGTG CAAGGGATGG ATCCGTTATA CCTTGTCAGT TTTGTAATAG 
    CCTAGCCGAT TGTACCTTTA TTTCTGAAAG CTTAATAGAG TGTTCATGCT 
    CAGATTATGA AATAGCAGAA TCTGTTTTCC C

    Gene models with high sequence identity

    1. AT1G80750.1 [+] show detail - Ribosomal protein L30/L7 family protein
      E-value: 2e-62; Score: 236.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S RIBOSOMAL PROTEIN L7 1.3e-87
    superfamily Ribosomal protein L30, ferredoxin-like fold domain 3.1e-51
    HMMTigr Ribosomal protein L7, eukaryotic 1.4e-97
    Gene3D no description 1.8e-15
    HMMPfam Ribosomal protein L30, N-terminal 4.3e-14
    HMMPfam Ribosomal protein L30p/L7e, conserved region 3.2e-12

    See the detailed result >

    AT1G80750.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L30/L7 family protein
    Computational Description
    Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1152 Blast hits to 1152 proteins in 343 species: Archae - 126; Bacteria - 0; Metazoa - 424; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR