K21523

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21523

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21523

Determination of introduced cDNA(s)

  • J023063I18 - Rice Full-length cDNAs - Original: J023063I18

    full reading [+] show sequence

    Nucleotide sequence: J023063I18 - full reading 
    GCCCGTCTCG CCTCCTCCGC AAGTGACGTC GACGCCTCAT CTCCCCTCCC 
    TCTTTTTCCC CGCAGCGATA CGGCATTCGT GACCTCCCGA TTGTTGCCAA 
    CCCCCCTCGC CTTCCGATTG CTGCCACCCC CGCGCCTCGC CGCTTGCCCG 
    TCTCCTGTTC GTCCCTCGGG AGCGGGAGGC TAGGGCCGAC AGCAGCGTTC 
    GCGCCGGCGC GGGATTGGGT TCTTTGTTCT TGTCAGTGCT GTGTTTGCTC 
    GCAAGGGTCA TCGTGAGAAT GGACCAGATT TACATGGCTG CTGTCAATAA 
    CAAGACTTCA TTGCCTGATG ATGAGCCAAT GAAGAAAATT AGTGGAGATA 
    TGCCTGTGAC TGCTGGAAAC GCTTGCTTTG ACTGCAACAT TTGCCTTGAT 
    TTTGCAGCAG AGCCGGTGGT TACTCTTTGT GGTCATCTCT ACTGCTGGCC 
    TTGCATCTAT GAGTGGCTAT GTCCAGGGGT TGGATCGACT GCCAGTAACA 
    ACAGCAGTTT GGCAAGGCGA CAGTGCCCTG TGTGTAAGGC TACACTCTCC 
    CCAGACATGC TGGTGCCATT GTATGGTCGT GGGGGGAGTC TGAAGAAATC 
    ACTGAATGGT GTGCCCATTC CACGACGACC AACCGTGCAG CGGGAGGCGG 
    TTGAGCATCA AAACACACAC AATAACATCG ATGATCGGCA CCATGAGAAC 
    ATGGAACCCA GCCCTCCACC ACAACCGCTG CGGCATTCGA GCCATCATTC 
    CAGTGCAACT GAATTTGATT TTATTTACCC GCCATCACCA ATTGGGCGTG 
    GCTTGATCCA CTCGACGGCT GGTGGTGTGC TTGGGGGGAT GGCAGTGGCG 
    GTGCTACCAT GGGCATTCCG TGGCCAGGTG CCACCGAGCA TGTTCATGAG 
    TCCCCACTAT GTCACGGCAC ACAATATGAG CTCTAGAGCG AGGAGACATC 
    AGATGGAAGT TGAGAGGTCA CTGCATCAGA TCTGGTTCTT CCTCTTCGTT 
    TTTGTGGTGC TGTGCCTGCT CTTGTTCTGA AGCAAGATGG TGGTGTATTC 
    CTTTTGTAAA TACGGGAAGG CAAGACACTA ATGGGTGGAT GCATATGGTA 
    AAAGAGGGTG GTTAACACTG TTGGTCTGTA TCGATAAGCA TGTGCCTAAA 
    GCATGCTGAT ATAGAGATGT AATGTGACAA GACTTAAGGT GAAATGCACA 
    TTTCATTCTT CTCTTGTCCT

    Gene models with high sequence identity

    1. AT4G27470.1 [+] show detail - RING membrane-anchor 3
      E-value: 7e-24; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RNF5 3.3e-38
    ProfileScan Zinc finger, RING-type 11.929
    HMMSmart Zinc finger, RING-type 2.6e-09
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 1.4e-12
    superfamily RING/U-box 8e-15
    HMMPfam Zinc finger, C3HC4 RING-type 2.1e-06

    See the detailed result >

    AT4G27470.1

    Model type
    Protein coding
    Short Description
    RING membrane-anchor 3
    Curator Summary
    Encodes a RING finger E3 ubiquitin ligase.
    Computational Description
    RING membrane-anchor 3 (RMA3); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING membrane-anchor 1 (TAIR:AT4G03510.2); Has 2828 Blast hits to 2826 proteins in 265 species: Archae - 0; Bacteria - 0; Metazoa - 1348; Fungi - 459; Plants - 695; Viruses - 22; Other Eukaryotes - 304 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR