K21524

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21524

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21524

Determination of introduced cDNA(s)

  • J033073D03 - Rice Full-length cDNAs - Original: J033073D03

    full reading [+] show sequence

    Nucleotide sequence: J033073D03 - full reading 
    GACCCGCCTC CGCCGATCCC CATTCCAACC CGCGACTGCG AGCGAGGCGA 
    GTAGGGCGGC TTCGTCGTTC GTCCTGCTGC TTCCGCCGCA TCCATCCTGA 
    TATGACTTGT TGAGTGGAAA GAATCAATAT AGTACAATCT ATTTTCTTCT 
    CAATGTGTAG AAGAAACAGT CTGTAACCAT ACATACTTAT TAATACGACT 
    AGTGAAATCT AGACATGGAC GATGAGAATG GCCTTGAGCT TAGCTTGGGT 
    CTCTCTTTGG GTGGGACATC AGGAAAGTCT AAGGCTAGAG ATGCTCCTCT 
    AGAACCTAAA GCAGAGCCTC AAGTGGAAGA GAGCAGTAGC AAAGGTGTTT 
    CACAAACTCC TGAGGCTCCT TTTGTGCATT ACTATCAAAC AAATGCAGAG 
    AACCAAGAAC ACAGTAGCAA GCAGAGACAC AGCCCTGCTG CACCACCGTT 
    TGGGAACTTT TGGGGACAGC CAGGGAGTTC TTCTGTTCCT GTGGCAGATG 
    GATCCAATGA ACAGAAGCCA GTCTCTAGTA AACGGAAATT ACTTTCTGAG 
    GAGATAAGTT TTCAGAAGAA ACCTAATACA GCTGCTGAGC AACCTGATGC 
    ATTTAGTAAG AGCTCTGACG GTGGTGTAAA AAACGCTCCT ATTTCAATTA 
    GCACGGATGA TGGTTCAACA GGTGAAAACG AGGATGTTGC AGAATCAGAA 
    GCAGAAGGCT CAAACTCTTG GTTGGTTGCA CAGCGTGAAG ACAGTGCTAA 
    GGGATCTGTT GTCAATAGAG GATCTGACAG AAAACGATCC AGTGATGATG 
    CTGCAGTTGG TTTTCAAGGA AAGAGGCAGC CAAGTTTCTC AGGAAGTGAA 
    TCCAGCTCTG GAAAATTGCC ACAAGGAAAT CCTTTGTCAT TGCAAGCATC 
    AAATGTTGTT GCTGTGCCAT ATCAAGTCCC GTCTCAGGTT TCAGCTCCTC 
    CCAGTATTAC CAATGCATCA AATTTCACTC CAGTATGTAC AGTGCAGTTG 
    AGGCCACCTA CAAACAATGG ACTAGCTGTT ACAATGGGCA GTACCTCTCA 
    GGTAGCTTTT GGTTATCCAG CTGTCCAGCT ACCAACACTT GAAACAAGCT 
    CTTCATGGGC TTTTGGTGCT CCACCTCAGG CTATGTCCTC TTTTACTGCA 
    AAAGACAAAG TTGAACGAGC AGGAATCAGT CAAGCTGACG ATGGCAAGAA 
    AACTCAAGAG GCTGGTGCTT CCTCTTCTGC TCTTGTGGAG GATGACAAGA 
    AGTCTGATAG GGCATTACCT CTCATGGGTT CTGCTATAAG GCCAGGCATT 
    GCACCAAATG TCAAATTCGG AGGATCTGGA TCGTATCCTG ACCTTCCCTG 
    GGTTTCTACC ACTGGTACTG GGCCAAATGG CAGAACCATA TCAGGTGTAA 
    CATATAAGTT TGGCAGAAAC GAGGTGAAGA TAGTCTGTGC CTGCCATGGC 
    ACCCACATGA CGCCGGAGGA ATTTATGCGG CACGCAAGTG CAGATGCTCC 
    GGGCCAAGAA AATAGTGCAA CTTTGCCGGC ATTTCCTGTC GGGAACCAAG 
    CAGCCTCAGC CCAAAACTAA TTCACCGATC TGTATGACGG TTTCAATGAG 
    TGCTGGACTA ATACCTGTTG CGCCCTTTGT GTTTATATCC TCCATTCCTT 
    ATACTATTAT TATTATGTAT TGGTGCTCAT ATGATATTTA TCTTGTAAGT 
    TTAGACACGT CATGTTTTAT GCTTGATGTT GAGGATAAAT TTGTTGTATG 
    TCTTTAACTT ATTATTATGC ATCTTTTTAG GAGGATCAAA CAAGTCGGAG 
    CTTTAAATAA CCTGAATTCC GCTGTAGCCA TATGGAATCA TGTGGATTTT 
    TTGCCAATTG ATGTTGTGGT G

    Gene models with high sequence identity

    1. AT4G28910.3 [+] show detail - novel interactor of JAZ
      E-value: 3e-43; Score: 173.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G28910.3

    Model type
    Protein coding
    Short Description
    novel interactor of JAZ
    Computational Description
    novel interactor of JAZ (NINJA); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: response to jasmonic acid stimulus, jasmonic acid mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 3 (TAIR:AT3G29575.4); Has 317 Blast hits to 301 proteins in 73 species: Archae - 2; Bacteria - 15; Metazoa - 43; Fungi - 39; Plants - 175; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR