K21534

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21534

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21534

Determination of introduced cDNA(s)

  • J023060F18 - Rice Full-length cDNAs - Original: J023060F18

    full reading [+] show sequence

    Nucleotide sequence: J023060F18 - full reading 
    GACGCGCCGC GCGACACAAT CAGTTCACCA CCGCAGCCAC CCCTAGCTAA 
    ATCCCTCGGC GGCGGGGGAG GTGGCGGCGT GCGTGGGCAT CTCGGCGGGG 
    GTCGTACGCT CATGTCGGCG CTGGTTTGGC TCTGCGTATT GGTTTTAAGT 
    GGATTTCCTG TGCACAATGT CATCGATTCT TCGATCCATT CAGCTGAGGA 
    ACAGTATATG GAGTAGCTTC CCTGTCAGAT TTCTTAAGCA ACAAGCCGGA 
    TTATCAACTG TAGAATTGCT TGATCCTAGA AGCTGTGGGA AACGACATTT 
    CACAACACAA GTACAGGAAC ATGGGAAGGA AGTTGCGGCG GCAGCAACTA 
    TTCTAGTTTT TGATCTTGAG ACTACTGGCT ATTTCCATAA GGATCATAGA 
    ATAGTTGAGT TTGCACTCTG TGATCTTTCT GGAGGAAAGA ATAGCACTTT 
    TGAAACTCTT GTTAATCCTG AAAGGACTGT TCCTGACTAC GTTGAACATC 
    TCATTAAAAT TGGCACTGAT CTCGTGTGCA GGCCTGGTAT CCCAAGGTTT 
    AGTGATGTAA TCCCACTACT ATTGGCATTC GTTCGAAGTC GCCAAGCTCC 
    TGGCAAGCCA GTTCTGTGGG TTGCTCATAA CGCAAAACAA TTTGATGCTC 
    GTTTCCTTGC TCAGGAGTTT GATCGTTGTT CAGCACCACT TCCTGCAGAT 
    TGGCTGTTTT TTGACACCCT TCTCTTGGCA AAAAAGATGG TGAAAGCAGA 
    GGGAAAAAAA CGTCGTACAA GCTTGGAGGC ACTGAGAGAA CACTATGGCA 
    TCGTCTCGCA TGACGATGCG CATAGAGCAA TGCGAGATGT TATGATATTG 
    TCTCAGGTTT TCCAGAAAAT GACTTTTGAT CTAAAACTGA CAAATGAAGA 
    ACTAATAAAC GAGGCCATGA AGGCAAGTGA ATTCAGCAAG ATTTCTTAAT 
    TTTTAAAACT CCAGCTTTTT TTAGTGCTTA AACTTATTTA ACCTTCTGTG 
    CACATGCTGG ATATTTTTCT AGCTGGTGTC ATCTCGGCAT TAAAGAACTA 
    TGCCTTTTTT ACTATTGAAA TAGTACCTGT ATTTTTCAAT AAAAACCTGC 
    AATTTGGACC GAACAAGTTG ATATCTTCAT TGCTACCAGG ATGATAAAAC 
    CATGGCTGAA CCATTTGCAT TGGATGACCA TCACATCTAT TTGATATGCT 
    TCGGTGCTGG ATTCAGTGTG GAATGATATT TCTTTGATTT GTCTTGCTTT 
    ATCTATGAGC TGTCAGCTAT TGAAAAGTAT TATTAGTGCT TTTTATTCTT 
    GGGTAGCATA TGCCATTTAA ATTATTTGAA CTTGTGAGAT CAATACATCC 
    TGGTGGAAGT TAGTTGGGAC CTGTT

    Gene models with high sequence identity

    1. AT5G26940.4 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 4e-47; Score: 186.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Exonuclease, RNase T/DNA polymerase III 1.8e-21
    Gene3D no description 7.4e-27
    superfamily Polynucleotidyl transferase, ribonuclease H fold 2.8e-31
    HMMSmart Exonuclease 2.9e-37

    See the detailed result >

    AT5G26940.4

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR