K21608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21608

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21608

Determination of introduced cDNA(s)

  • J023130E21 - Rice Full-length cDNAs - Original: J023130E21

    full reading [+] show sequence

    Nucleotide sequence: J023130E21 - full reading 
    GTTAGAGCGA CACAAGCTAA GGTTGCTTAT ATTGGACCTC CAACTGACTT 
    CAACTATGAC CATGAGCATC TTGGCACTGG ACCACAAACC CTTGTTGAGA 
    TTGCAGAGGG TCGGCATCCC TTCTGTTCAA CTCTGCAGTC TGCTAAGAAT 
    CCTGTCATCA TTGCTGGGGC CGGGTTATTT GACCGGGAAG ACCAAGATGC 
    CCTTTTCTCA ACGATAGAGA CTGTAGCCAA AAAATTCAAT GTGGTTAGAC 
    CAGACTGGAA CGGGCTTAAT GTTCTATTGC TGCATGCTGC ACAAGCTGCA 
    GCGCTTGATC TTGGTCTTGT TGCTAATCCT ACAGAGAGCA TCAAGTCCAC 
    AAAGTTTCTG TATCTGATGG GAGCTGATGA TGTAGACTTG GACAAGGTTC 
    CGGATGATGC ATTTGTTGTT TACCAGGGAC ACCATGGTGA CAAGGCTGTG 
    TATAGGGCCA ATGTTATCCT GCCATCATCA GCATTCAGCG AGAAAGAAGG 
    CACCTATGAG AACACCGAGG GATGCACTCA GTGGACAATC CCAGCTGTTC 
    CTACTGTTGG TGATGCTAGG GATGACTGGA AGATCCTCCG TGCTCTCTCT 
    GAGGTGGCTG GGGCTCAACT TCCTTATGAT AGCCTCTCAG GTGTGAGGGA 
    CCGGATTAGC ATGGTAGCAC CAAACCTTGT GCATGTAGAT GAGAGGGAGC 
    CGTGCACTAT TTCCTCTGAA GTGAAGCCTC CGGTAAAGCA ACAAGTGAGC 
    TCTACTCCAT TCAAAACTGT TGTGGAGAAC TTCTATATGA CTGATGCAAT 
    CACAAGAGCC TCAAAGATAA TGGCCCAATG CAGTGCAACC TTGTTGAAGA 
    AGTGAAATCT ACACCTTTCG GAAGCTATTC ATCGGCAGAA AAGATTTTAG 
    TTCCTTGTTT TTGCTCCAAA TTTCCCCAGT TGTTGCATGC TTGGTTGGAA 
    ATTGGAGTAT AATTTGGACT GCCCTTAGAT TTGAAGAGCA GCAAAACTTG 
    GTCTGTGAAT TTTTCTTGTG TATGAGAAGC AGAGCATACT CAATAAGCTT 
    GTTGTCCTTC TGAATCATGC AACAGCCACA GGCAATAATT TTGTTCCTTT 
    TTAGTTC

    Gene models with high sequence identity

    1. AT5G37510.2 [+] show detail - NADH-ubiquinone dehydrogenase, mitochondrial, putative
      E-value: 9e-106; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NADH-UBIQUINONE OXIDOREDUCTASE 9.5e-39
    HMMPanther NITRATE, FROMATE, IRON DEHYDROGENASE 9.5e-39
    Gene3D no description 3.2e-19
    HMMPfam Molybdopterin oxidoreductase 4.7e-37
    HMMPfam NADH-quinone oxidoreductase, chain G, C-terminal 8.3e-15
    superfamily Formate dehydrogenase/DMSO reductase, domains 4.8e-28

    See the detailed result >

    AT5G37510.2

    Model type
    Protein coding
    Short Description
    NADH-ubiquinone dehydrogenase, mitochondrial, putative
    Curator Summary
    Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
    Computational Description
    embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR