K21609

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21609

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21609

Determination of introduced cDNA(s)

  • J023088C20 - Rice Full-length cDNAs - Original: J023088C20

    full reading [+] show sequence

    Nucleotide sequence: J023088C20 - full reading 
    GGTCCGCGCC GCGACGATGC GAGCGCAACC ACGTTTGACT CAGCCGACGG 
    CGACCGGCCG CGTAGTACGC GTGTCATCGT CGAGCTCGAG CCCATCCATC 
    CACGTGTTCC TCCTCCTTCC TCGCGGCGAC GCCGACGACG GCTATAAATA 
    ACCCGCGCCC CCATCCCGAC CACCGCTCCT CCGCCTCCGC CTCTCATATT 
    TTTCCCATTT TTCACCTGCC TTAATTCGCC CTCCTCCCAT AACCGTAGTA 
    GTAATCGTAC TCCTCCATTC TCGCCGGAAT CCAGAGCGAA GCTGTAGGAA 
    ATTGTTGGGA GGAGGAGCAA TGCCTTACTG CGAGGTGGAC AGGTACCAGA 
    ACGGCGACGA GTGGGACGGC GTCCGCCTCT TCTACCGCCG CTTCGGCCGC 
    GGCGCCACCA AGGTGCTCCT CGTCATCGGA TTGGCGGGGA CGCACGACTC 
    GTGGGGCCCG CAGATCAAGG GGCTGACCGG GTCGCTGGAG CCGGCCGCCG 
    ACGACGAGGA GTCCGGCGAC GCCGCGGCGG CGGAGGGGGA CGACGGCGAT 
    GGCATCGAGG TCTGCTGCTT CGACAACCGC GGCGTCGGCC GGAGCTCCGT 
    GCTCCCGCAC AAATCCTACT ACTCGACGGT GATCATGGCG AGGGACGCTC 
    TGGCCTTGAT GGACCATCTG GGGTGGAAGA AAGCTCATGT ATTCGGCCAT 
    TCCATGGGCG CGATGATATC CTGCAAGCTG GCAGCCATGG CGCCGCACAG 
    GATTTGCTCG TTGGCGTTGC TTAATGTTAC TGGAGGTGGC TTCCAGTGCT 
    TCCCGAAGTT AGATGGGCAG ATGCTCTCGC TTGCATTCCG TTTCTTAAGG 
    GCAAGAACTC CAGAAGAAAG AGCTCTGGTA GATTTGGAAA CCCATTATAC 
    AAAGGAATAT CTTGATGAGA AAGTTGGATC ATGCACGAGG AGAACAATCC 
    TCTATCAAGA ATATGTGAAG GGCATATCAT CGACAGGGAT GCAGTCTAAC 
    TGTGGGTTTG AAGGTCAAGT TAATGCATGC TGGACTCACA ATATGACAAC 
    TAAAGAACTA GATACAATTC GGTCTGCCGG TTTTCTAGTT TCAGTTATTC 
    ATGGGAGGTC TGACATTATT GCGCAATTAT GTCATGCGAG ACGACTTGCA 
    GAAAGGCTTA TTCCTGTTGC TAGAATGGTC GAACTTCATG GTGCGCATCT 
    AGTAAGCCAT GAAAGACCAG AGGAGGTCAA CAATGCACTA ATGGAATTAA 
    TAAAAGCCAC AAAATCTATG ATGAAACCTG AGGAATGGTC ATCCCAGCCA 
    GAGAATTCAT CAGAAACCGG GGCTCTTATT TCTGCAAGAC CTGTTTCCGT 
    CACAATACGA ACAGATGATG GGGGAAATGC CGCAATAGCA GTCTATAACT 
    TACTTGCCAA GCTGCAACTA AGCTTTCTTT ATGTCATAGA AGTGATACTG 
    ATGGGGTTTG AGCATATGAG GAACATTGTA AAAGTAATGA AGCCAGTAAG 
    GGTCGCAGCA ATCGAATCAT AAGAAACAAA ACTCATGTAA ATTACTCTCA 
    GAGCCGTCGA GGAGACCTGG TATTTTCATG TCTCCTCAGT ACTGTGGAGA 
    TGATGGTTTT AGAATAGCAT CTCCGAAGAC TTCCTGAGAA AACTTCTGCT 
    CTAAGCAGAA TAAGTGAACA ATACGGAAGA AAATTGATGA GGTATTTGGT 
    GCGCGCCTTG GACAGAAGCG TCCCAGGGCA GAAATGCACA AACTGATGTA 
    CCCGTATGAG TGTAAATGTT GTTACCGTAT CACGGCCTTA TGCTGTCGCC 
    ATTCTTTTGT ATCAGCATGA AATGTGATTA TTCCCATCAA TAATAAACCT 
    GGTTCCCTGC

    Gene models with high sequence identity

    1. AT5G53050.3 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 2e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Alpha/beta hydrolase fold-1 8e-20
    HMMPanther CARBOXYLESTERASE NP 1.4e-60
    HMMPanther ALPHA/BETA HYDROLASE RELATED 1.4e-60
    superfamily alpha/beta-Hydrolases 7.7e-46
    Gene3D no description 1.4e-47

    See the detailed result >

    AT5G53050.3

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 11083 Blast hits to 11081 proteins in 1482 species: Archae - 92; Bacteria - 8297; Metazoa - 245; Fungi - 229; Plants - 334; Viruses - 5; Other Eukaryotes - 1881 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR