K21613

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21613

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K21613

Determination of introduced cDNA(s)

  • J033124P21 - Rice Full-length cDNAs - Original: J033124P21

    full reading [+] show sequence

    Nucleotide sequence: J033124P21 - full reading 
    GACGCACCTT CATCTTCGCT CTCGCTTTCC CGTGTAAGCC GGAGGAACGG 
    GCGGCCGGCC TTCTCTCCCC GCGAGTCCGC GACCCCGCAC GCGCGGCCGG 
    CGAGCAAGCC CAGAGGCGCG TCGCCGAGCC CGACCTAGCA TCCTCGGTTG 
    GCGCGGCCTA CTCGAGCGGC GCAGGGCCAG CGAGAGCTCA GGTTCGGAGG 
    GGGGCTATGC GGGAGGCATC CTTCCACCGC CGACCTCCAC CTCGGCCGGA 
    ATAGAACTGA AGGAGTCAAG GTATATCAGA TGATGGATCT GTCCACGACT 
    TCAGTAGTGG CTGCTAAGGC CTACAAGTAC AGAGCAGAAT CACTTGTTAA 
    GGACTACCTT CTTGCAGATT GTTATGTTTC ATACACTGCT GTGCTTGGTG 
    GGATCCTGAT GTGCAAAATG GTCTATGACA TCACACACTT AATCAGTTCA 
    TTGTACTACA AGGGTTATGG TTCTCTTACG AAAATCCAAA AGCTTGAGTG 
    GAACAACAGG GGCATGTCCA CTGTCCATGC AATGTTTATC ACATTAATGT 
    CAGTTTACCT AGTATTCTTC TCCAACCTAT TCTCTGATGA GCTGGATGGC 
    CCAGTAACAG TTCGGAGTTC AAACCTCTCC AATTTTACAC TGGGGGTTTC 
    TCTGGGGTAC TTCATCGCTG ACCTTGCTAT GTTATCCTGG GCTTATCCTT 
    CCCTTGGCGG AATGGAGTAT GTTCTTCACC ACTTGCTGTC AATTATTTCT 
    TTAGTCTATG CTATTTATTC TGAAGAAGGA CAGTTGTACA CATACATGGT 
    TCTCATCTCT GAAACAACCA CACCTGGAAT CAACCTCCGA TGGTTTCTTG 
    ATACTGTTGG AATGAAAAGA TCGAAAGCCT ATCTTGTCAA TGGTGTTACA 
    ATGTTTGTTG CATGGCTGGT GGCAAGGATA ATTTTGTTCA TCTACTTGTT 
    TTACCACATA TACTTTCACA TTGATCAGGT TAAGCAGATG CGCACCTTTA 
    GCTGCATTCT GATATTCGCT GTGCCCACAA TACTATTAGT GATGAACACA 
    GTGTGGTTTG TCAAAATCTT GAGAGGTCTC AAGAAGACGC TAGCCAAGAG 
    GCAGTGAAGA GTGGTGAATT GCTCATAGGC GCATCTACAA CCATCCTTTC 
    GTACAGTCAC ATACAACTAC ATATATTTTC TACGTTAAGC TTTATAGTGC 
    AACTCATAGC GCAAGCAAAA GATCCCTTGT ACACATGTTG GAAAAATCTC 
    CTCAACATTG CCGAAAATTT TTGTCCCTGT ACGGTTCTAC ATTGTACATA 
    TATATATATG CACGTCTAGT TATGGCTGAG G

    Gene models with high sequence identity

    1. AT1G31300.2 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
      E-value: 3e-86; Score: 315.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart TRAM/LAG1/CLN8 homology domain 4.2e-39
    ProfileScan TRAM/LAG1/CLN8 homology domain 34.3
    HMMPanther CT120 PROTEIN 0.00013
    HMMPfam TRAM/LAG1/CLN8 homology domain 1e-34

    See the detailed result >

    AT1G31300.2

    Model type
    Protein coding
    Short Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Computational Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR