K21634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21634

Determination of introduced cDNA(s)

  • J033033B07 - Rice Full-length cDNAs - Original: J033033B07

    full reading [+] show sequence

    Nucleotide sequence: J033033B07 - full reading 
    GGCATTGGCC GTTCGGATCG CGGTGGCGCT TCGTGAAGGT GGGGGAGAAG 
    GGGGAAAAGG AGTCGGCTTT CGGGGAGATG GCGCGCAATG CGGCGGACAA 
    GGGGACGTCC ATCGACGCGC AGCTGCGGAT CCTGGCGCCT AAGAAGCTCT 
    CGGAGGACGA CAAGCTTGTG GAGTACGACG CGCTGCTCCT CGATCGCTTC 
    CTCGACATCC TCCAGGATCT GCATGGGGAG GACATCAGGG AGACGGTTCA 
    AGAATGCTAT GAATTAGCTG CTGAGTATGA AAGTAAGATT GCGTATCGTA 
    GGAGGATAAA ACTGAAGAAG GGTGATTTTG CTGATGAAAA CTCTGCTACA 
    ACTGAATCAA ACTTTGAGGA GACCCTAAAA AGGCTTGTTG GTGAGCTTAA 
    GAAGTCCCCT CATGAGGTAT TTGATGCTCT CAAGAATCAA ACAATCGACC 
    TGGTCCTGAC AGCACATCCA ACTCAGTCAG TCAGGAGGTC GCTGCTACAA 
    AAGCATGGCA GGATAAGAAG TTGTTTAACA AAACTTTATG CAAAAGACAT 
    AACTCCAGAT GAGAAGCAGG AACTCGATGA AGCACTTAAG AGAGAGATCC 
    AAGCCGCCTT TAGAACAGAT GAAATTCGGC GAGCACCTCC TACACCACAG 
    GATGAAATGC GTGCTGGAAT GAGTTATTTT CATGAGACAA TATGGAAGGG 
    TGTACCCAAG TTTTTACGTA GGGTTGATAC TGCCCTTAAG AACATTGGCA 
    TAAACGAGCG AGTGCCCTAT AATGCTCCTC TTATTCAATT TTCTTCTTGG 
    ATGGGTGGAG ACCGTGATGG AAATCCAAGA GTCACACCAG AGGTTACAAG 
    GGACGTATGC CTGTTAGCTA GAATGATGGC TGCTAACTTA TACTATGCAC 
    AGATAGAGGA TCTGATGTTT GAGCTATCTA TGTGGCGCTG TAGTGATGAA 
    CTACGTGTAA AAGCTGATCA GTTACACCGT TGCGCAAAGA AAAACACAAC 
    AAAGCACTAT ATAGAGTTCT GGAAACAAGT TCCTCCGAGT GAACCCTATC 
    GTGTAATACT GAGCAATGTC AGAGATAAGT TGTACAATAC ACGCGAGCGA 
    GCACGCCATT TATTAGCCAG TGGATTTTCT GAAATTCCTG ACGAAGCAAC 
    ATTCACTGAT GTTGAGCAGT TCTTGGAGCC TCTTGAGCTC TGTTACAGGT 
    CTCTCTGTGC CTGTGGTGAT AATTCTATTG CAGATGGCAG TCTTCTTGAC 
    TTTCTACGGC AAGTGTCCAC ATTTGGACTA TCCCTTGTTA GACTTGATAT 
    TAGGCAAGAA TCTGACCGAC ATACTGATGT TATGGATGCC ATAACTCAAT 
    ACCTTGGAAT TGGATCCTAT CGTGAATGGT CAGAGGAGAA ACGCCAAGAA 
    TGGCTTCTGT CAGAACTCAA TGGAAAGAGG CCATTATTTG GTCCTGACCT 
    TCCCCAGACG GATGAAATTG CTGATGCCCT AGATACTTTT CATGTGATAG 
    CAGAACTACC CTATGATAGC TTTGGTGCAT ATGTAATATC CATGGCAACA 
    GCTCCTTCAG ATGTTCTAGC AGTTGAGCTT CTGCAACGTG AATGTCATGT 
    GAAGAAGCCA CTGAGAGTTG TGCCATTGTT TGAAAAACTA GCAGATCTGG 
    AAGCAGCACC AGCAGCTCTT GCCCGACTTT TCTCTGTTGA CTGGTACAGA 
    AATAGGATCG ACGGAAAGCA GGAAGTAATG ATTGGGTATT CAGATTCTGG 
    AAAAGATGCT GGCCGTTTCT CTGCAGCTTG GGAACTGTAT AAAGCTCAAG 
    AGGAGCTTAT TAAAGTTGCT AAGCAGTTTG GGGTTAAGTT GACTATGTTT 
    CATGGGCGAG GTGGAACTGT TGGAAGAGGT GGGGGTCCTA CACACCTTGC 
    TATACTGTCA CAACCTCCAG ATACCATTCA TGGATCACTT CGTGTGACTG 
    TTCAAGGTGA AGTCATTGAG CAATCTTTTG GAGAGGAGCA TTTGTGTTTT 
    AGGACACTTC AACGTTTTAC ATCTGCTACT CTTGAGCATG GTATGTATCC 
    ACCAATTTCA CCAAAGCCAG AATGGCGTGC TTTGATGGAT GAAATGGCCG 
    CTGTTGCTAC AAAAGAATAC CGGTCCATTG TCTTCCAAGA GGCACGATTT 
    GTTGAATATT TCCGCCTTGC AACACCAGAG TTGGAATATG GTAGGATGAA 
    TATTGGAAGT AGGCCATCAA AACGAAAGCC TAGTGGAGGC ATTGAATCAC 
    TTCGTGCAAT TCCTTGGATC TTTGCTTGGA CACAAACTCG ATTCCACCTA 
    CCAGTGTGGC TTGGTTTTGG CGCAGCGTTC AAGCATGTCT TGCAGAAGGA 
    CATACGCAAT CTTCAGATCC TTCAGGAGAT GTACAACGAA TGGCCATTTT 
    TCAGGGTTAC AATAGACTTG GTTGAGATGG TGTTTGCTAA GGGTGATCCT 
    GGTATAGCAG CTCTGTATGA CAAGTTGCTA GTTTCTGAGG ATTTGTGGCC 
    ATTTGGTGCT CGTCTTAGAG CAAACTATGA AGAAACAAAG CAACTTCTTC 
    TACAGGTTGC TGGACACAAA GACCTTCTGG AGGGAGATCC TTACTTGAGG 
    CAGAGACTGC GTATCCGTGA TTCCTACATC ACAGCGCTGA ATGTTTGCCA 
    AGCTTGCACG CTAAAGCGTA TCAGGGACCC TGGCTTCCAT GTAAGCCCCC 
    GAGCTCACCT CTCCAAGGAC ATAATGGACT CAGGGAAGCC AGCCGCTGAG 
    CTTGTGAAGC TGAACACAAC AAGCGAGTAC GGCCCAGGCC TCGAGGACAC 
    TCTCATCCTG ACCATGAAGG GCATCGCTGC TGGTATGCAG AACACTGGGT 
    GAAGTAGAAC TGGTTCGTTC TGATGGTGTG TTATGGTGTC ATGAATTAGT 
    GTAGTTTGCA CCTCTATGCA ATCACTATTT GCAGTTTGCA CCTCTGAACT 
    CTATATGTAA ATAAGGGGAT GCTAAGCAAC GTATAACTAA GACTGGTTAT 
    ATCCATGGAT ATTACCTGTT TAGCATGTTA TATATCGAAC TCTTATGCTG 
    TTCACC

    Gene models with high sequence identity

    1. AT1G53310.3 [+] show detail - phosphoenolpyruvate carboxylase 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Phosphoenolpyruvate carboxylase, active site 0
    PatternScan Phosphoenolpyruvate carboxylase, active site 0
    HMMPfam Phosphoenolpyruvate carboxylase, C-terminal region 2.5e-182
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 1.3e-134
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    FPrintScan Phosphoenolpyruvate carboxylase 6.9e-83
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 0

    See the detailed result >

    AT1G53310.3

    Model type
    Protein coding
    Short Description
    phosphoenolpyruvate carboxylase 1
    Curator Summary
    Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
    Computational Description
    phosphoenolpyruvate carboxylase 1 (PPC1); FUNCTIONS IN: protein binding, phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 3 (TAIR:AT3G14940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR