K21635

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21635

Determination of introduced cDNA(s)

  • J033046H09 - Rice Full-length cDNAs - Original: J033046H09

    full reading [+] show sequence

    Nucleotide sequence: J033046H09 - full reading 
    GATTTAATCG TCACATCACT AGCTCATCAG TCATCACCTG CTCTCTGCAA 
    ACACTGTGAC TTTGGGTGAG TGAGTGAGTG AGTGAAGAGG AGGAAGATGG 
    GGAAGGGAGG GAAAGGAGCC GAGGCGGCGG CGGCGGCGGT GGCCGGAGCC 
    GGTGAGGAGG AGAACATGGC GGCGTGGCTG GTGGCGAAGA ACACCCTCAA 
    GATCATGCCC TTCAAGCTCC CGCCAGTTGG GCCTTATGAT GTCCGTGTCC 
    GGATGAAGGC AGTGGGCATC TGCGGCAGCG ACGTGCACTA CCTCAGGGAG 
    ATGCGCATTG CGCATTTCGT GGTGAAGGAG CCGATGGTGA TCGGGCACGA 
    GTGCGCCGGC GTGATAGAGG AGGTCGGCAG CGGCGTGACG CACCTCGCCG 
    TCGGCGACCG CGTGGCGCTC GAGCCCGGCA TCAGCTGCTG GCGCTGCAGG 
    CACTGCAAGG GCGGCCGCTA CAACCTCTGC GAGGACATGA AGTTCTTCGC 
    CACCCCTCCC GTCCACGGAT CCCTCGCCAA CCAGATCGTG CACCCTGGTG 
    ATCTGTGCTT CAAGCTGCCG GAGAACGTGA GCCTGGAGGA AGGCGCCATG 
    TGCGAGCCGC TGAGCGTGGG CGTGCACGCG TGCCGCCGCG CCGACGTCGG 
    GCCGGAGACG GGGGTGCTGA TCATGGGCGC GGGGCCGATC GGCCTGGTCA 
    CCCTGCTGGC GGCGCGCGCG TTCGGCGCGA CGCGCGTCGT GATCGTGGAC 
    GTGGACGAAC ACCGCCTCTC CGTGGCCCGA TCCCTCGGCG CCGACGCCGC 
    CGTGAGGGTG TCGGCGCGCG CGGAGGACGT CGGCGAGGAG GTGGAACGGA 
    TCAGGGCGGC GATGGGCGGG GACATCGACG TGAGCCTGGA CTGCGCCGGG 
    TTCAGCAAGA CGGTGGCGAC GGCGCTGGAG GCGACGCGCG GCGGCGGGAA 
    GGTGTGCCTC GTCGGGATGG GGCACAACGA GATGACGGTG CCGCTGACGT 
    CGGCGGCGAT CAGGGAGGTG GACGTGGTGG GGATATTCCG GTACAAGGAC 
    ACGTGGCCGC TCTGCATCGA GTTCCTCCGC AGCGGCAAGA TCGACGTGAA 
    GCCGCTCATC ACCCACCGAT TCGGGTTCTC GCAGGAGGAC GTGGAGGAGG 
    CGTTCGAGGT CAGCGCCCGT GGCCGCGACG CCATCAAGGT CATGTTCAAC 
    CTCTAGATCG ATCCATCCAT CGATCGATCG ACAGCAAAAT ATGTGACGGG 
    TTTGGAACGT ATGTCGATCG GACAAAAAAA TGTGTGCTTG CTTTGCTGGT 
    TGCCGTGTCT GTCTGTCTCT ACATGAATAA AAGGCGGCAA CGTTCTGTCC 
    TCG

    Gene models with high sequence identity

    1. AT5G51970.2 [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
      E-value: 5e-162; Score: 567.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
    superfamily GroES-like 9.5e-58
    superfamily NAD(P)-binding domain 2.8e-34
    superfamily GroES-like 0.0026
    Gene3D no description 1.7e-56
    HMMSmart Polyketide synthase, enoylreductase 8.5e-06
    HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 1.7e-97
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 1.7e-97
    HMMPfam Alcohol dehydrogenase GroES-like 2.3e-32
    HMMPfam Alcohol dehydrogenase, zinc-binding 3.9e-25

    See the detailed result >

    AT5G51970.2

    Model type
    Protein coding
    Short Description
    GroES-like zinc-binding alcohol dehydrogenase family protein
    Curator Summary
    Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.
    Computational Description
    GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G63620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR