K21714

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21714

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21714

Determination of introduced cDNA(s)

J013000I03 - Rice Full-length cDNAs - Original: J013000I03

full reading [+] show sequence

GACTTCTTGT TCTTGGCAGC GAGCGCCATT TCCAGAGGAT TTCTTGGGTT 
CTATAGGTGA GGTTGGAGGC GCAGCTTCGT CGTCGTCTGA TGGCGCCATG 
GCGTGCGGCG GCGATGGCGT CGTCCCAGCT CGCGCGCCGC GCGGCGAGGA 
GGCTGCTTTC GTCTCAGCAT CGCCGTCACT GCGCCGCGCC CGCCTGTCCC 
TGGCTCCTGG GCTCGGCGCC GCCGGTTCTT GCGCCGTCTC CGGTGGCTGC 
GGCGGCGGCG GGAGATCGTC GGGGATTCTG CTCCGTCCGG CGTTTCACCG 
GGGAGAGCAA CGCCGCCGCC GCCGTCGAGG AGGCGGAGAA CGGGTTGGTG 
GCCGGTGGTG ATCAGGCAAT AGATTTCCCT GGAGGAAAGG TCTCCTTTGT 
TGCTGAAATG AACTTCCTTC CAGAATCTCA GAGGGATAGG ATCAACTGTT 
ACCGTGTTCT TGACGATGAC GGCAGAACAA TATCTGGAAG CAGATTCCAA 
GAGGTCAGTA AGGAGCTGGC TCTGAAAATG TACAATGAAA TGGCCACCCT 
CCAGGTCATG GATACAATCT TCTTTGAAGC TCAGAGGCAG GGAAGAATCT 
CATTCTATCT CACTTCACAT GGTGAGGAAG CAATCAATAT AGCCTCTGCT 
GCTGCACTTA CTATTGATGA CATTGTACTG CCTCAGTACA GGGAACCTGG 
TGTTCTTCTA TGGCGCGGCT TCACACTGCA AGAATTTGCA AATCAGTGCT 
TTGGGAATAA GCTGGATTAT GGTAAAGGGA GGCAGATGCC AATACACTAT 
GGATCGAACC GTCTGAATTA TTTCACGGTG TCATCGCCTA TTGCGTAAGT 
CTGAAATATC TCTTCCATGT CCACACCAAA TTCATGCAAG CCAAGGGCAG 
GTTCATCATT CTTTGATGAT TCATCAGTAC ACAGCTCCCT CATGCTGTTG 
GAGCTGCGTA CTCCTTGAAG ATGGACAAGA AAGATGCATG TGCCATCACG 
TATTTTGGCG ATGGCGGCAC AAGTGAGGGA GACTTCCATG CTGCACTCAA 
CTTTGCAGCA GTTATGGAAG CGCCGGTGAT CTTCTTCTGC CGCAACAATG 
GCTGGGCAAT CAGCACCCCA ACTAGTGAAC AGTTCAGAAG TGATGGAGCT 
GTTATCCGTG GTCAAGCTTA TGGAATGCGC AGTATCAGAG TAGATGGAAA 
TGATGCTCTT GCTGTGTACA GTGCAGTTCA CACAGCCAGG GAAATGGCTA 
TCAAGGAAGG AAGGCCAATT TTAGTTGAGG CACTGACTTA CCGGGTCGGC 
CATCACTCGA CATCCGATGA TTCAACCAAA TACAGGCCGG TCGATGAGAT 
CGAGCACTGG CGAACAGCGC GAGATCCGAT TTCCAGGTAC AGAAAATGGG 
TTCAGGGGAA TGGCTGGTGG TGTGATGAAG ATGAATCTGA ACTCAGGAAC 
AATGTGAGGC AAGAGCTTCT GAAAGCCATT CAGGTGGCAG AAAGAATGCC 
GAAACCGCCG CTCGCTGAAC TATTCACCGA TGTTTATGAT GAAGTTCCTT 
CCAACCTAAG AGAGCAAGAG CGATTGCTGA GGGATACAAT CAAGAAGCAC 
CCTGCAGACT ACCCAGCTGA TGTGCATATT TAGTTGTATT GGGTGACCAG 
AGGTTTCCAT ATTGTAGTAA CTATTGATAA TTTAGGTTCA TAGCATTGAT 
AAATAATAAC AACAATAATT CAGGC

Gene models with high sequence identity

AT5G09300.1 [+] show detail - Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
E-value: 2e-173; Score: 251.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT-	1.1e-138
HMMPanther	PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SU	1.1e-138
HMMPanther	2-OXOISOVALERATE DEHYDROGENASE ALPHA SUBUNIT-	4.8e-68
HMMPanther	PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SU	4.8e-68
superfamily	Thiamin diphosphate-binding fold (THDP-bindin	3.3e-79
superfamily	Thiamin diphosphate-binding fold (THDP-bindin	8.8e-26
Gene3D	no description	8.5e-90
Gene3D	no description	1.2e-39
HMMPfam	Dehydrogenase, E1 component	2.2e-69
HMMPfam	Dehydrogenase, E1 component	4.4e-18

See the detailed result >

AT5G09300.1

Model type: Protein coding
Short Description: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Computational Description: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT1G21400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR