K21806

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K21806

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K21806

Determination of introduced cDNA(s)

  • J023150G03 - Rice Full-length cDNAs - Original: J023150G03

    full reading [+] show sequence

    Nucleotide sequence: J023150G03 - full reading 
    GATGGGCAAC GCGAGCGGCA GGCTGGACGA CATCGCCGAC GCCGAAATGG 
    ATGACGGCGG CGGAGGCGGC AACCGCGCCG GCGCTGGGGA CTACTCCTCC 
    TCGCTGCGCC CCATGGACCG TGCTGGCCTC CCGCCGTACG GCGGCGCCGG 
    GGGAAGCGGC GGACTGGTGC GGCCCCCGTC GTCGGCAGCG GGGTACTCCG 
    GCGGCGGAGG GTCGTCGTCC CCGCCGGGGA CCCCCCCGCG GCCGCACTCC 
    CCGCGCATGT TCGTGCCGCA GAGTCCTGTA ACTCCATTGC ATAGAGCTGT 
    AGATGGACCT CCTCCAGTAT TTAACCAGAT ATTAACGAGT GAACAAGAGG 
    AGGATCACGA TGGTCCCCCT GACAAGCTGA TTCCTACTCT GCTTGTGTGG 
    ACTCTTGGAG GGAAGAATGT CTATATAGAA GGATCATGGG ATAACTGGAA 
    ATCAAAGCAA CTCGTCCATA AATGTGGAAA GGATCACTGC GTCATGTTAG 
    GGCTTGCATC TGGAGTTTAC CGTTATAGAT TCATTGTTGA TGGAGAAAGA 
    AGATTTCAGC CTGATCGTCC CCGTGAAGCT GACATTATGG GCACCATTTC 
    AAATCTTATT GATGTTCATG ATTATGTCCC GGATAGCGTG GACAGTGTGT 
    CAGAGCTGAT GGCTCCTCCA TCGCCGGACT CCAGCTACGG TTTCCTGGCT 
    CCTGACGACA AGGAGTTCAC CAAGGAGCCT CCCGCTCTGC CGCCGCAGCT 
    CCACCTGGGC GTGCTCAACT CGCGAGGAGG CTCCGGCGGG AAGGAGGGAG 
    AGTGCGCCAT GCCCAAGCAC AACGTCCTCG GCCATGTCTT CATCGGCAAG 
    GGCACCCCAC CCATGGTCGC TGCCCTCGGC ACCACCTTCA GGTTCCAGTC 
    CAAGTTTGTC ACCAAAGTCC TCTACAAGGC CATCCAAAGA GAGGACAGAT 
    AGCTTTATTA GCTGGCAATG CTAGAACAAA TTAGTCATGC ATTCTGTTCA 
    TTCATTGTTT TGGAATAGTA ATAATAATGG TAATCTTGAG GGCGTGGACC 
    GTGATGATTT CATCAGTGTT AGGAACAAAA ACAGACCCAT TGATGTGCTT 
    TTCAGTCACC AATTTGTTTG CTGACGCCAT ATTAAGGATC TACCAGAAGA 
    ATAAAGATGG TGATCGATAC TCTTTCATAC ATTTTTGTGT GTGTGTGTGT 
    CAGGGTTGGT CAGTTTTGT

    Gene models with high sequence identity

    1. AT5G21170.1 [+] show detail - 5'-AMP-activated protein kinase beta-2 subunit protein
      E-value: 6e-58; Score: 221.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SNF1-KINASE BETA SUBUNIT, PLANTS 4.5e-92
    HMMPanther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNI 4.5e-92
    HMMPfam 5-AMP-activated protein kinase, beta subunit, interaction domain 5.1e-16

    See the detailed result >

    AT5G21170.1

    Model type
    Protein coding
    Short Description
    5'-AMP-activated protein kinase beta-2 subunit protein
    Curator Summary
    Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.
    Computational Description
    AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR